1 PAS_9#1
340-445 aa · 106 aa · 12.9% of protein
Raw token
PAS_9:340:0.000000000000677:445:106:102P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QRY07_RS00545
Histidine kinase, Classic
Bacillus cereus · GCF_030291955
ClassHKTypeClassicLength820 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_030291955#QRY07_RS00545Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
PAS_9PAS_4HisKAHATPase_c
Protein length820 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage380 / 820 aa (46.3%)Merged over positioned domains only.
Domain description1 PAS_9,1 PAS_4,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa820 aa
Domain-by-domain annotation4 items
2 PAS_4#2
472-581 aa · 110 aa · 13.4% of protein
Raw token
PAS_4:472:0.000000000342:581:112:1103 HisKA#3
598-659 aa · 62 aa · 7.6% of protein
Raw token
HisKA:598:0.0000000000000704:659:62:644 HATPase_c#4
706-807 aa · 102 aa · 12.4% of protein
Raw token
HATPase_c:706:1.31e-24:807:105:109- Raw architecture: PAS_9:340:0.000000000000677:445:106:102#PAS_4:472:0.000000000342:581:112:110#HisKA:598:0.0000000000000704:659:62:64#HATPase_c:706:1.31e-24:807:105:109
- Domain description: 1 PAS_9,1 PAS_4,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_030291955::NZ_CP128105.1::G00069
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span113508-115970Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQRY07_00545RefSeq proteinWP_286118673.1
Context group ID
GCF_030291955::NZ_CP128105.1::G00069Context members
QRY07_RS00545
Partner locus tags
QRY07_RS00545
Partner old locus tags
QRY07_00545
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_286118673.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQRY07_RS00545Primary locus identifier stored in the genes table.
Old locus tagQRY07_00545Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP128105.1Sequence record reported by the local genomic context database.
Genomic interval113 508-115 970 nt2 463 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span113 508-115 970 ntGCF_030291955::NZ_CP128105.1::G00069
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_030291955::NZ_CP128105.1::G00069Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP128105.1All displayed genes belong to this local TCS context.
Neighborhood span113 508-115 970 nt2 463 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
113 508 nt115 970 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QRY07_RS00545GCF_030291955#QRY07_RS00545
HKClassicCurrent focus
113 508-115 970 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_030291955#QRY07_RS00545The current gene is the representative for this cluster.
PFAM architecture5TM-5TMR_LYT + PAS_4 + PAS_9 + HisKA + HATPase_c5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0530356
Simplified PFAM architecture for HKOC_0530356
PFAM domain coverage: 502 / 820 aa (61.2%)
1 aa820 aa
5TM-5TMR_LYTPAS_4PAS_9HisKAHATPase_c
- Simplified architecture: 5TM-5TMR_LYT + PAS_4 + PAS_9 + HisKA + HATPase_c
- Raw architecture: 5TM-5TMR_LYT[22-146] | PAS_4[336-448] | PAS_9[483-580] | HisKA[598-659] | HATPase_c[705-808]
- Domain count: 5
- Matched identifier: HKOC_0530356
- Positioned domains: 5TM-5TMR_LYT 22-146 ; PAS_4 336-448 ; PAS_9 483-580 ; HisKA 598-659 ; HATPase_c 705-808
Cluster members and taxonomy
Representative gene: GCF_030291955#QRY07_RS00545
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 396 · GCF_030291955
AssemblyASM3029195v1 · Complete Genomehaploid
Genome composition5 332 520 bp · 35,5% GCBacillus cereus
Signal transduction countsGenes 117 · HK 64 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key