1 Response_reg#1
18-119 aa · 102 aa · 50.7% of protein
Raw token
Response_reg:18:0.0000000000171:119:102:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QSV04_RS08715
Response regulator, unclassified
Bifidobacterium longum · GCF_030291575
ClassRRTypeunclassifiedLength201 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_030291575#QSV04_RS08715Stable P2CS identifier used across views.
GenomeGCF_030291575Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length201 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage102 / 201 aa (50.7%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa201 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:18:0.0000000000171:119:102:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_030291575::NZ_JASWIU010000016.1::G00004
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span5878-6483Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQSV04_08670RefSeq proteinWP_050388385.1
Context group ID
GCF_030291575::NZ_JASWIU010000016.1::G00004Context members
QSV04_RS08715
Partner locus tags
QSV04_RS08715
Partner old locus tags
QSV04_08670
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_050388385.1Primary protein accession used for annex mappings.
UniProt accessionA0ABD7WN74Primary UniProt accession resolved in the annex database.
UniProt IDA0ABD7WN74_BIFLLDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQSV04_RS08715Primary locus identifier stored in the genes table.
Old locus tagQSV04_08670Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JASWIU010000016.1Sequence record reported by the local genomic context database.
Genomic interval5 878-6 483 nt606 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span5 878-6 483 ntGCF_030291575::NZ_JASWIU010000016.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_030291575::NZ_JASWIU010000016.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JASWIU010000016.1All displayed genes belong to this local TCS context.
Neighborhood span5 878-6 483 nt606 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 878 nt6 483 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QSV04_RS08715GCF_030291575#QSV04_RS08715
RRunclassifiedCurrent focus
5 878-6 483 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003370035#CE158_RS11325Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_1129206
Simplified PFAM architecture for RROC_1129206
PFAM domain coverage: 112 / 232 aa (48.3%)
1 aa232 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[49-160]
- Domain count: 1
- Matched identifier: RROC_1129206
- Positioned domains: Response_reg 49-160 ; Response_reg 49-160
Cluster members and taxonomy
Representative gene: GCF_003370035#CE158_RS11325
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_030291575
AssemblyASM3029157v1 · Contighaploid
Genome composition2 467 767 bp · 59,5% GCBifidobacterium longum
Signal transduction countsGenes 22 · HK 10 · RR 10CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key