1 HAMP#1
4-56 aa · 53 aa · 17.4% of protein
Raw token
HAMP:4:0.0000175:56:53:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QSU99_RS05775
Histidine kinase, Classic
Bifidobacterium longum · GCF_030291415
ClassHKTypeClassicLength305 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_030291415#QSU99_RS05775Stable P2CS identifier used across views.
GenomeGCF_030291415Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length305 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage226 / 305 aa (74.1%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa305 aa
Domain-by-domain annotation3 items
2 HisKA#2
85-150 aa · 66 aa · 21.6% of protein
Raw token
HisKA:85:0.0000000239:150:66:643 HATPase_c#3
197-303 aa · 107 aa · 35.1% of protein
Raw token
HATPase_c:197:4.23e-32:303:107:109- Raw architecture: HAMP:4:0.0000175:56:53:69#HisKA:85:0.0000000239:150:66:64#HATPase_c:197:4.23e-32:303:107:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_030291415::NZ_JASWIP010000013.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span157015-158631Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQSU99_05810RefSeq proteinWP_097773460.1
Context group ID
GCF_030291415::NZ_JASWIP010000013.1::G00004Context members
QSU99_RS05770QSU99_RS05775
Partner locus tags
QSU99_RS05770QSU99_RS05775
Partner old locus tags
QSU99_05805QSU99_05810
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_097773460.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E5A4F4Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E5A4F4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQSU99_RS05775Primary locus identifier stored in the genes table.
Old locus tagQSU99_05810Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JASWIP010000013.1Sequence record reported by the local genomic context database.
Genomic interval157 714-158 631 nt918 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span157 015-158 631 ntGCF_030291415::NZ_JASWIP010000013.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_030291415::NZ_JASWIP010000013.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JASWIP010000013.1All displayed genes belong to this local TCS context.
Neighborhood span157 015-158 631 nt1 617 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
157 015 nt158 631 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QSU99_RS05770GCF_030291415#QSU99_RS05770
RROmpR
157 015-157 707 nt · Forward (+)
QSU99_RS05775GCF_030291415#QSU99_RS05775
HKClassicCurrent focus
157 714-158 631 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003438845#DXB81_RS13305Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2882336
Simplified PFAM architecture for HKOC_2882336
PFAM domain coverage: 171 / 305 aa (56.1%)
1 aa305 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[85-148] | HATPase_c[197-303]
- Domain count: 2
- Matched identifier: HKOC_2882336
- Positioned domains: HisKA 85-148 ; HATPase_c 197-303
Cluster members and taxonomy
Representative gene: GCF_003438845#DXB81_RS13305
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_030291415
AssemblyASM3029141v1 · Contighaploid
Genome composition2 487 696 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 25 · HK 11 · RR 13CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key