1 PAS_9#1
62-165 aa · 104 aa · 26.2% of protein
Raw token
PAS_9:62:0.0000782:165:111:102P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QSV03_RS04940
Probable incomplete histidine kinase
Bifidobacterium longum · GCF_030291375
ClassHKTypeClassicLength397 aaTM0ValidatedNoCompleteNoContextNo local context
Gene IDGCF_030291375#QSV03_RS04940Stable P2CS identifier used across views.
GenomeGCF_030291375Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Selected clusterNo clusterThis gene is not linked to a local CD-HIT cluster.
External referencesMIST4 QSV03_RS04940MIST4
Domain signature
Compact overview inferred from the domain field
PAS_9HATPase_c
Protein length397 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage219 / 397 aa (55.2%)Merged over positioned domains only.
Domain description1 PAS_9,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa397 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
283-397 aa · 115 aa · 29.0% of protein
Raw token
HATPase_c:283:3.51e-25:397:115:109- Raw architecture: PAS_9:62:0.0000782:165:111:102#HATPase_c:283:3.51e-25:397:115:109
- Domain description: 1 PAS_9,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: No
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
No local TCS context mapping is available for this gene.
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No external UniProt / GO / PubMed mapping is available for this gene.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQSV03_RS04940Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconUnavailableNo contig or replicon mapping is available for this gene.
Genomic intervalUnavailableNo start/end genomic coordinates are available for this gene.
StrandUnavailableStrand sign follows the local context database convention.
Local TCS group spanUnavailableNo grouped neighborhood span is available for this gene.
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
No local TCS neighborhood is available for this gene on this server.
Clusters
CD-HIT memberships and selected cluster details for the current gene class
No cluster membership available for this gene.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_030291375
AssemblyASM3029137v1 · Contighaploid
Genome composition2 391 554 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 21 · HK 10 · RR 10CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key