1 Response_reg#1
5-114 aa · 110 aa · 86.6% of protein
Raw token
Response_reg:5:1.21e-23:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QQO71_RS07925
Response regulator, CheY family
Clostridioides difficile · GCF_030252105
ClassRRTypeCheYLength127 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_030252105#QQO71_RS07925Stable P2CS identifier used across views.
GenomeGCF_030252105Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length127 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage110 / 127 aa (86.6%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa127 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:5:1.21e-23:114:111:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_030252105::NZ_JASSYC010000256.1::G00020
Group size33 locus tags listed below.
HK / RR1 / 2Counts resolved for the local TCS neighborhood.
Context span1-3196Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQQO71_07920RefSeq proteinWP_284934739.1
Context group ID
GCF_030252105::NZ_JASSYC010000256.1::G00020Context members
QQO71_RS07925QQO71_RS07930QQO71_RS07935
Partner locus tags
QQO71_RS07925QQO71_RS07930QQO71_RS07935
Partner old locus tags
QQO71_07920QQO71_07925QQO71_07930
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_284934739.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQQO71_RS07925Primary locus identifier stored in the genes table.
Old locus tagQQO71_07920Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JASSYC010000256.1Sequence record reported by the local genomic context database.
Genomic interval1-382 nt382 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1-3 196 ntGCF_030252105::NZ_JASSYC010000256.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_030252105::NZ_JASSYC010000256.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JASSYC010000256.1All displayed genes belong to this local TCS context.
Neighborhood span1-3 196 nt3 196 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt3 196 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
QQO71_RS07925GCF_030252105#QQO71_RS07925
RRCheYCurrent focus
1-382 nt · Reverse (-)
QQO71_RS07930GCF_030252105#QQO71_RS07930
HKClassic
432-2 447 nt · Reverse (-)
QQO71_RS07935GCF_030252105#QQO71_RS07935
RROmpR
2 519-3 196 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000009205#CD630_RS17365Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1407979
Simplified PFAM architecture for RROC_1407979
PFAM domain coverage: 183 / 226 aa (81.0%)
1 aa226 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[150-223]
- Domain count: 2
- Matched identifier: RROC_1407979
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 150-223 ; Trans_reg_C 150-223
Cluster members and taxonomy
Representative gene: GCF_000009205#CD630_RS17365
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_030252105
AssemblyASM3025210v1 · Contighaploid
Genome composition4 245 176 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 103 · HK 49 · RR 53CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key