1 GAF_3#1
167-290 aa · 124 aa · 23.2% of protein
Raw token
GAF_3:167:0.00000219:290:131:129P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QQO71_RS06180
Histidine kinase, Classic
Clostridioides difficile · GCF_030252105
ClassHKTypeClassicLength534 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_030252105#QQO71_RS06180Stable P2CS identifier used across views.
GenomeGCF_030252105Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
GAF_3HisKAHATPase_c
Protein length534 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage305 / 534 aa (57.1%)Merged over positioned domains only.
Domain description1 GAF_3,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa534 aa
Domain-by-domain annotation3 items
2 HisKA#2
310-377 aa · 68 aa · 12.7% of protein
Raw token
HisKA:310:0.00000000000224:377:68:643 HATPase_c#3
421-533 aa · 113 aa · 21.2% of protein
Raw token
HATPase_c:421:1.03e-30:533:113:109- Raw architecture: GAF_3:167:0.00000219:290:131:129#HisKA:310:0.00000000000224:377:68:64#HATPase_c:421:1.03e-30:533:113:109
- Domain description: 1 GAF_3,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_030252105::NZ_JASSYC010000194.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1-2339Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQQO71_06180RefSeq proteinWP_284934712.1
Context group ID
GCF_030252105::NZ_JASSYC010000194.1::G00014Context members
QQO71_RS06180QQO71_RS06185
Partner locus tags
QQO71_RS06180QQO71_RS06185
Partner old locus tags
QQO71_06180QQO71_06185
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_284934712.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQQO71_RS06180Primary locus identifier stored in the genes table.
Old locus tagQQO71_06180Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JASSYC010000194.1Sequence record reported by the local genomic context database.
Genomic interval1-1 607 nt1 607 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-2 339 ntGCF_030252105::NZ_JASSYC010000194.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_030252105::NZ_JASSYC010000194.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JASSYC010000194.1All displayed genes belong to this local TCS context.
Neighborhood span1-2 339 nt2 339 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt2 339 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QQO71_RS06180GCF_030252105#QQO71_RS06180
HKClassicCurrent focus
1-1 607 nt · Forward (+)
QQO71_RS06185GCF_030252105#QQO71_RS06185
RROmpR
1 641-2 339 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_030252105#QQO71_RS06180The current gene is the representative for this cluster.
PFAM architectureDUF4118 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1343924
Simplified PFAM architecture for HKOC_1343924
PFAM domain coverage: 285 / 534 aa (53.4%)
1 aa534 aa
DUF4118HisKAHATPase_c
- Simplified architecture: DUF4118 + HisKA + HATPase_c
- Raw architecture: DUF4118[43-148] | HisKA[310-377] | HATPase_c[422-532]
- Domain count: 3
- Matched identifier: HKOC_1343924
- Positioned domains: DUF4118 43-148 ; HisKA 310-377 ; HATPase_c 422-532
Cluster members and taxonomy
Representative gene: GCF_030252105#QQO71_RS06180
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_030252105
AssemblyASM3025210v1 · Contighaploid
Genome composition4 245 176 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 103 · HK 49 · RR 53CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key