1 Response_reg#1
5-114 aa · 110 aa · 47.0% of protein
Raw token
Response_reg:5:1.45e-28:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QQO71_RS04395
Response regulator OmpR family
Clostridioides difficile · GCF_030252105
ClassRRTypeOmpRLength234 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_030252105#QQO71_RS04395Stable P2CS identifier used across views.
GenomeGCF_030252105Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 234 aa (77.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
160-230 aa · 71 aa · 30.3% of protein
Raw token
Trans_reg_C:160:6.57e-26:230:74:77- Raw architecture: Response_reg:5:1.45e-28:114:111:111#Trans_reg_C:160:6.57e-26:230:74:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_030252105::NZ_JASSYC010000136.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span16560-18753Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQQO71_04395RefSeq proteinWP_074049002.1
Context group ID
GCF_030252105::NZ_JASSYC010000136.1::G00004Context members
QQO71_RS04395QQO71_RS04400
Partner locus tags
QQO71_RS04395QQO71_RS04400
Partner old locus tags
QQO71_04395QQO71_04400
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_074049002.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQQO71_RS04395Primary locus identifier stored in the genes table.
Old locus tagQQO71_04395Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JASSYC010000136.1Sequence record reported by the local genomic context database.
Genomic interval16 560-17 264 nt705 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span16 560-18 753 ntGCF_030252105::NZ_JASSYC010000136.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_030252105::NZ_JASSYC010000136.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JASSYC010000136.1All displayed genes belong to this local TCS context.
Neighborhood span16 560-18 753 nt2 194 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
16 560 nt18 753 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QQO71_RS04395GCF_030252105#QQO71_RS04395
RROmpRCurrent focus
16 560-17 264 nt · Forward (+)
QQO71_RS04400GCF_030252105#QQO71_RS04400
HKClassic
17 266-18 753 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002301405#BGU19_RS18835Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1053636
Simplified PFAM architecture for RROC_1053636
PFAM domain coverage: 181 / 234 aa (77.4%)
1 aa234 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[159-230]
- Domain count: 2
- Matched identifier: RROC_1053636
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 159-230 ; Trans_reg_C 159-230
Cluster members and taxonomy
Representative gene: GCF_002301405#BGU19_RS18835
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_030252105
AssemblyASM3025210v1 · Contighaploid
Genome composition4 245 176 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 103 · HK 49 · RR 53CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key