1 HisKA_3#1
88-153 aa · 66 aa · 23.0% of protein
Raw token
HisKA_3:88:9.68e-20:153:67:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QQO66_RS18260
Histidine kinase, Classic
Clostridioides difficile · GCF_030251985
ClassHKTypeClassicLength287 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_030251985#QQO66_RS18260Stable P2CS identifier used across views.
GenomeGCF_030251985Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length287 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage151 / 287 aa (52.6%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa287 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
194-278 aa · 85 aa · 29.6% of protein
Raw token
HATPase_c:194:0.00000000013:278:104:109- Raw architecture: HisKA_3:88:9.68e-20:153:67:68#HATPase_c:194:0.00000000013:278:104:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_030251985::NZ_JASSYS010000444.1::G00045
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span822-2327Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQQO66_18315RefSeq proteinWP_284934278.1
Context group ID
GCF_030251985::NZ_JASSYS010000444.1::G00045Context members
QQO66_RS18255QQO66_RS18260
Partner locus tags
QQO66_RS18255QQO66_RS18260
Partner old locus tags
QQO66_18310QQO66_18315
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_284934278.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQQO66_RS18260Primary locus identifier stored in the genes table.
Old locus tagQQO66_18315Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JASSYS010000444.1Sequence record reported by the local genomic context database.
Genomic interval1 462-2 327 nt866 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span822-2 327 ntGCF_030251985::NZ_JASSYS010000444.1::G00045
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_030251985::NZ_JASSYS010000444.1::G00045Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JASSYS010000444.1All displayed genes belong to this local TCS context.
Neighborhood span822-2 327 nt1 506 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
822 nt2 327 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QQO66_RS18255GCF_030251985#QQO66_RS18255
RRNarL
822-1 469 nt · Reverse (-)
QQO66_RS18260GCF_030251985#QQO66_RS18260
HKClassicCurrent focus
1 462-2 327 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000448845#QAQ_RS06320Use this link to inspect the representative gene detail.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2550381
Simplified PFAM architecture for HKOC_2550381
PFAM domain coverage: 150 / 387 aa (38.8%)
1 aa387 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[188-252] | HATPase_c[294-378]
- Domain count: 2
- Matched identifier: HKOC_2550381
- Positioned domains: HisKA_3 188-252 ; HATPase_c 294-378
Cluster members and taxonomy
Representative gene: GCF_000448845#QAQ_RS06320
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_030251985
AssemblyASM3025198v1 · Contighaploid
Genome composition4 000 623 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 95 · HK 46 · RR 49CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key