1 Response_reg#1
1-108 aa · 108 aa · 49.3% of protein
Raw token
Response_reg:1:7.32e-30:108:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QQO66_RS06595
Response regulator OmpR family
Clostridioides difficile · GCF_030251985
ClassRRTypeOmpRLength219 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_030251985#QQO66_RS06595Stable P2CS identifier used across views.
GenomeGCF_030251985Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length219 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 219 aa (84.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa219 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
139-215 aa · 77 aa · 35.2% of protein
Raw token
Trans_reg_C:139:2.36e-28:215:77:77- Raw architecture: Response_reg:1:7.32e-30:108:109:111#Trans_reg_C:139:2.36e-28:215:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_030251985::NZ_JASSYS010000157.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1-1570Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQQO66_06625RefSeq proteinWP_284934199.1
Context group ID
GCF_030251985::NZ_JASSYS010000157.1::G00009Context members
QQO66_RS06595QQO66_RS06600
Partner locus tags
QQO66_RS06595QQO66_RS06600
Partner old locus tags
QQO66_06625QQO66_06630
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_284934199.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQQO66_RS06595Primary locus identifier stored in the genes table.
Old locus tagQQO66_06625Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JASSYS010000157.1Sequence record reported by the local genomic context database.
Genomic interval1-660 nt660 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-1 570 ntGCF_030251985::NZ_JASSYS010000157.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_030251985::NZ_JASSYS010000157.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JASSYS010000157.1All displayed genes belong to this local TCS context.
Neighborhood span1-1 570 nt1 570 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt1 570 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QQO66_RS06595GCF_030251985#QQO66_RS06595
RROmpRCurrent focus
1-660 nt · Forward (+)
QQO66_RS06600GCF_030251985#QQO66_RS06600
HKClassic
662-1 570 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000009205#CD630_RS10600Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1586848
Simplified PFAM architecture for RROC_1586848
PFAM domain coverage: 185 / 223 aa (83.0%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[143-218]
- Domain count: 2
- Matched identifier: RROC_1586848
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 143-218 ; Trans_reg_C 143-218
Cluster members and taxonomy
Representative gene: GCF_000009205#CD630_RS10600
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_030251985
AssemblyASM3025198v1 · Contighaploid
Genome composition4 000 623 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 95 · HK 46 · RR 49CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key