1 HisKA#1
89-151 aa · 63 aa · 20.5% of protein
Raw token
HisKA:89:0.0000000554:151:63:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QQO97_RS06690
Histidine kinase, Classic
Clostridioides difficile · GCF_030251825
ClassHKTypeClassicLength307 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_030251825#QQO97_RS06690Stable P2CS identifier used across views.
GenomeGCF_030251825Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length307 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 307 aa (55.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa307 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
199-306 aa · 108 aa · 35.2% of protein
Raw token
HATPase_c:199:8.88e-30:306:108:109- Raw architecture: HisKA:89:0.0000000554:151:63:64#HATPase_c:199:8.88e-30:306:108:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_030251825::NZ_JASSXY010000136.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span14080-15706Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQQO97_06700RefSeq proteinWP_009888178.1
Context group ID
GCF_030251825::NZ_JASSXY010000136.1::G00006Context members
QQO97_RS06685QQO97_RS06690
Partner locus tags
QQO97_RS06685QQO97_RS06690
Partner old locus tags
QQO97_06695QQO97_06700
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009888178.1Primary protein accession used for annex mappings.
UniProt accessionA0A0H3MYW5Primary UniProt accession resolved in the annex database.
UniProt IDA0A0H3MYW5_CLODCDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQQO97_RS06690Primary locus identifier stored in the genes table.
Old locus tagQQO97_06700Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JASSXY010000136.1Sequence record reported by the local genomic context database.
Genomic interval14 783-15 706 nt924 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span14 080-15 706 ntGCF_030251825::NZ_JASSXY010000136.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_030251825::NZ_JASSXY010000136.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JASSXY010000136.1All displayed genes belong to this local TCS context.
Neighborhood span14 080-15 706 nt1 627 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
14 080 nt15 706 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QQO97_RS06685GCF_030251825#QQO97_RS06685
RROmpR
14 080-14 781 nt · Forward (+)
QQO97_RS06690GCF_030251825#QQO97_RS06690
HKClassicCurrent focus
14 783-15 706 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003215#QAC_RS0202000Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2880535
Simplified PFAM architecture for HKOC_2880535
PFAM domain coverage: 172 / 307 aa (56.0%)
1 aa307 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[88-151] | HATPase_c[199-306]
- Domain count: 2
- Matched identifier: HKOC_2880535
- Positioned domains: HisKA 88-151 ; HATPase_c 199-306
Cluster members and taxonomy
Representative gene: GCF_000003215#QAC_RS0202000
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_030251825
AssemblyASM3025182v1 · Contighaploid
Genome composition4 347 648 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 104 · HK 49 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key