1 Response_reg#1
1-76 aa · 76 aa · 43.4% of protein
Raw token
Response_reg:1:4.01e-22:76:77:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QQP00_RS19370
Response regulator OmpR family
Clostridioides difficile · GCF_030251785
ClassRRTypeOmpRLength175 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_030251785#QQP00_RS19370Stable P2CS identifier used across views.
GenomeGCF_030251785Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length175 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage135 / 175 aa (77.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa175 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
117-175 aa · 59 aa · 33.7% of protein
Raw token
Trans_reg_C:117:5.6e-25:175:59:77- Raw architecture: Response_reg:1:4.01e-22:76:77:111#Trans_reg_C:117:5.6e-25:175:59:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_030251785::NZ_JASSYP010001231.1::G00009
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1-527Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQQP00_19370RefSeq proteinWP_284932194.1
Context group ID
GCF_030251785::NZ_JASSYP010001231.1::G00009Context members
QQP00_RS19370
Partner locus tags
QQP00_RS19370
Partner old locus tags
QQP00_19370
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_284932194.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQQP00_RS19370Primary locus identifier stored in the genes table.
Old locus tagQQP00_19370Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JASSYP010001231.1Sequence record reported by the local genomic context database.
Genomic interval1-527 nt527 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-527 ntGCF_030251785::NZ_JASSYP010001231.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_030251785::NZ_JASSYP010001231.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JASSYP010001231.1All displayed genes belong to this local TCS context.
Neighborhood span1-527 nt527 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt527 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QQP00_RS19370GCF_030251785#QQP00_RS19370
RROmpRCurrent focus
1-527 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000009205#CD630_RS08860Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1080372
Simplified PFAM architecture for RROC_1080372
PFAM domain coverage: 185 / 233 aa (79.4%)
1 aa233 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[155-230]
- Domain count: 2
- Matched identifier: RROC_1080372
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 155-230 ; Trans_reg_C 155-230
Cluster members and taxonomy
Representative gene: GCF_000009205#CD630_RS08860
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_030251785
AssemblyASM3025178v1 · Contighaploid
Genome composition4 445 581 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 110 · HK 51 · RR 58CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key