1 HisKA#1
449-514 aa · 66 aa · 9.8% of protein
Raw token
HisKA:449:0.00000000574:514:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QQP00_RS12780
Histidine kinase, Classic
Clostridioides difficile · GCF_030251785
ClassHKTypeClassicLength671 aaTM0ValidatedNoCompleteYesContextpentad
Gene IDGCF_030251785#QQP00_RS12780Stable P2CS identifier used across views.
GenomeGCF_030251785Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length671 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 671 aa (25.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa671 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
565-668 aa · 104 aa · 15.5% of protein
Raw token
HATPase_c:565:3.68e-30:668:104:109- Raw architecture: HisKA:449:0.00000000574:514:66:64#HATPase_c:565:3.68e-30:668:104:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpentadGCF_030251785::NZ_JASSYP010000847.1::G00063
Group size55 locus tags listed below.
HK / RR2 / 3Counts resolved for the local TCS neighborhood.
Context span3297-9021Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQQP00_12780RefSeq proteinWP_022617553.1
Context group ID
GCF_030251785::NZ_JASSYP010000847.1::G00063Context members
QQP00_RS12765QQP00_RS12770QQP00_RS12775QQP00_RS12780QQP00_RS12785
Partner locus tags
QQP00_RS12765QQP00_RS12770QQP00_RS12775QQP00_RS12780QQP00_RS12785
Partner old locus tags
QQP00_12765QQP00_12770QQP00_12775QQP00_12780QQP00_12785
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_022617553.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQQP00_RS12780Primary locus identifier stored in the genes table.
Old locus tagQQP00_12780Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JASSYP010000847.1Sequence record reported by the local genomic context database.
Genomic interval6 257-8 272 nt2 016 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 297-9 021 ntGCF_030251785::NZ_JASSYP010000847.1::G00063
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_030251785::NZ_JASSYP010000847.1::G00063Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpentadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JASSYP010000847.1All displayed genes belong to this local TCS context.
Neighborhood span3 297-9 021 nt5 725 nt
Members51 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 297 nt9 021 nt
Neighborhood gene cards
5 genes in the current local neighborhood.
QQP00_RS12765GCF_030251785#QQP00_RS12765
HKClassic
3 297-4 412 nt · Reverse (-)
QQP00_RS12770GCF_030251785#QQP00_RS12770
RROmpR
4 448-5 146 nt · Reverse (-)
QQP00_RS12775GCF_030251785#QQP00_RS12775
RROmpR
5 527-6 207 nt · Reverse (-)
QQP00_RS12780GCF_030251785#QQP00_RS12780
HKClassicCurrent focus
6 257-8 272 nt · Reverse (-)
QQP00_RS12785GCF_030251785#QQP00_RS12785
RROmpR
8 344-9 021 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000531625#BN168_RS16720Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0842640
Simplified PFAM architecture for HKOC_0842640
PFAM domain coverage: 170 / 671 aa (25.3%)
1 aa671 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[450-514] | HATPase_c[563-667]
- Domain count: 2
- Matched identifier: HKOC_0842640
- Positioned domains: HisKA 450-514 ; HATPase_c 563-667
Cluster members and taxonomy
Representative gene: GCF_000531625#BN168_RS16720
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_030251785
AssemblyASM3025178v1 · Contighaploid
Genome composition4 445 581 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 110 · HK 51 · RR 58CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key