1 Response_reg#1
4-117 aa · 114 aa · 48.1% of protein
Raw token
Response_reg:4:2.17e-17:117:116:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QQP00_RS12140
Response regulator LytTR family
Clostridioides difficile · GCF_030251785
ClassRRTypeLytTRLength237 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_030251785#QQP00_RS12140Stable P2CS identifier used across views.
GenomeGCF_030251785Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length237 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage206 / 237 aa (86.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa237 aa
Domain-by-domain annotation2 items
2 LytTR#2
138-229 aa · 92 aa · 38.8% of protein
Raw token
LytTR:138:9.34e-25:229:97:98- Raw architecture: Response_reg:4:2.17e-17:117:116:111#LytTR:138:9.34e-25:229:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_030251785::NZ_JASSYP010000811.1::G00060
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span4023-4736Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQQP00_12140RefSeq proteinWP_139636755.1
Context group ID
GCF_030251785::NZ_JASSYP010000811.1::G00060Context members
QQP00_RS12140
Partner locus tags
QQP00_RS12140
Partner old locus tags
QQP00_12140
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_139636755.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQQP00_RS12140Primary locus identifier stored in the genes table.
Old locus tagQQP00_12140Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JASSYP010000811.1Sequence record reported by the local genomic context database.
Genomic interval4 023-4 736 nt714 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span4 023-4 736 ntGCF_030251785::NZ_JASSYP010000811.1::G00060
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_030251785::NZ_JASSYP010000811.1::G00060Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JASSYP010000811.1All displayed genes belong to this local TCS context.
Neighborhood span4 023-4 736 nt714 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 023 nt4 736 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QQP00_RS12140GCF_030251785#QQP00_RS12140
RRLytTRCurrent focus
4 023-4 736 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_030251785#QQP00_RS12140The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0978462
Simplified PFAM architecture for RROC_0978462
PFAM domain coverage: 203 / 237 aa (85.7%)
1 aa237 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-117] | LytTR[140-228]
- Domain count: 2
- Matched identifier: RROC_0978462
- Positioned domains: Response_reg 4-117 ; LytTR 140-228
Cluster members and taxonomy
Representative gene: GCF_030251785#QQP00_RS12140
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_030251785
AssemblyASM3025178v1 · Contighaploid
Genome composition4 445 581 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 110 · HK 51 · RR 58CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key