1 HisKA#1
558-624 aa · 67 aa · 8.6% of protein
Raw token
HisKA:558:3.11e-18:624:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QQP00_RS11490
Histidine kinase, Classic
Clostridioides difficile · GCF_030251785
ClassHKTypeClassicLength778 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_030251785#QQP00_RS11490Stable P2CS identifier used across views.
GenomeGCF_030251785Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length778 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage172 / 778 aa (22.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa778 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
671-775 aa · 105 aa · 13.5% of protein
Raw token
HATPase_c:671:0.000000000235:775:110:109- Raw architecture: HisKA:558:3.11e-18:624:67:64#HATPase_c:671:0.000000000235:775:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_030251785::NZ_JASSYP010000770.1::G00054
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span5145-8169Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQQP00_11490RefSeq proteinWP_235660829.1
Context group ID
GCF_030251785::NZ_JASSYP010000770.1::G00054Context members
QQP00_RS11490QQP00_RS11495
Partner locus tags
QQP00_RS11490QQP00_RS11495
Partner old locus tags
QQP00_11490QQP00_11495
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_235660829.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQQP00_RS11490Primary locus identifier stored in the genes table.
Old locus tagQQP00_11490Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JASSYP010000770.1Sequence record reported by the local genomic context database.
Genomic interval5 145-7 481 nt2 337 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span5 145-8 169 ntGCF_030251785::NZ_JASSYP010000770.1::G00054
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_030251785::NZ_JASSYP010000770.1::G00054Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JASSYP010000770.1All displayed genes belong to this local TCS context.
Neighborhood span5 145-8 169 nt3 025 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 145 nt8 169 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QQP00_RS11490GCF_030251785#QQP00_RS11490
HKClassicCurrent focus
5 145-7 481 nt · Reverse (-)
QQP00_RS11495GCF_030251785#QQP00_RS11495
RROmpR
7 453-8 169 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003482225#CDIF28670_RS14365Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0599912
Simplified PFAM architecture for HKOC_0599912
PFAM domain coverage: 172 / 778 aa (22.1%)
1 aa778 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[558-624] | HATPase_c[671-775]
- Domain count: 2
- Matched identifier: HKOC_0599912
- Positioned domains: HisKA 558-624 ; HATPase_c 671-775
Cluster members and taxonomy
Representative gene: GCF_003482225#CDIF28670_RS14365
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_030251785
AssemblyASM3025178v1 · Contighaploid
Genome composition4 445 581 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 110 · HK 51 · RR 58CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key