1 HAMP#1
166-232 aa · 67 aa · 14.3% of protein
Raw token
HAMP:166:0.00000414:232:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QQP04_RS17380
Histidine kinase, Classic
Clostridioides difficile · GCF_030251765
ClassHKTypeClassicLength467 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_030251765#QQP04_RS17380Stable P2CS identifier used across views.
GenomeGCF_030251765Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length467 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage239 / 467 aa (51.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa467 aa
Domain-by-domain annotation3 items
2 HisKA#2
245-309 aa · 65 aa · 13.9% of protein
Raw token
HisKA:245:0.0000000000000152:309:65:643 HATPase_c#3
359-465 aa · 107 aa · 22.9% of protein
Raw token
HATPase_c:359:1.13e-26:465:108:109- Raw architecture: HAMP:166:0.00000414:232:69:69#HisKA:245:0.0000000000000152:309:65:64#HATPase_c:359:1.13e-26:465:108:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_030251765::NZ_JASSYF010000370.1::G00043
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span15306-17438Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQQP04_17380RefSeq proteinWP_284939122.1
Context group ID
GCF_030251765::NZ_JASSYF010000370.1::G00043Context members
QQP04_RS17380QQP04_RS17385
Partner locus tags
QQP04_RS17380QQP04_RS17385
Partner old locus tags
QQP04_17380QQP04_17385
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_284939122.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQQP04_RS17380Primary locus identifier stored in the genes table.
Old locus tagQQP04_17380Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JASSYF010000370.1Sequence record reported by the local genomic context database.
Genomic interval15 306-16 709 nt1 404 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span15 306-17 438 ntGCF_030251765::NZ_JASSYF010000370.1::G00043
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_030251765::NZ_JASSYF010000370.1::G00043Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JASSYF010000370.1All displayed genes belong to this local TCS context.
Neighborhood span15 306-17 438 nt2 133 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
15 306 nt17 438 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QQP04_RS17380GCF_030251765#QQP04_RS17380
HKClassicCurrent focus
15 306-16 709 nt · Reverse (-)
QQP04_RS17385GCF_030251765#QQP04_RS17385
RROmpR
16 713-17 438 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_030251765#QQP04_RS17380The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1756512
Simplified PFAM architecture for HKOC_1756512
PFAM domain coverage: 171 / 467 aa (36.6%)
1 aa467 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[245-308] | HATPase_c[359-465]
- Domain count: 2
- Matched identifier: HKOC_1756512
- Positioned domains: HisKA 245-308 ; HATPase_c 359-465
Cluster members and taxonomy
Representative gene: GCF_030251765#QQP04_RS17380
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_030251765
AssemblyASM3025176v1 · Contighaploid
Genome composition4 036 254 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 98 · HK 47 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key