1 HisKA#1
308-374 aa · 67 aa · 12.9% of protein
Raw token
HisKA:308:0.000000000000016:374:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QQO70_RS05025
Histidine kinase, Classic
Clostridioides difficile · GCF_030251705
ClassHKTypeClassicLength521 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_030251705#QQO70_RS05025Stable P2CS identifier used across views.
GenomeGCF_030251705Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length521 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage153 / 521 aa (29.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa521 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
427-512 aa · 86 aa · 16.5% of protein
Raw token
HATPase_c:427:0.0000000447:512:90:109- Raw architecture: HisKA:308:0.000000000000016:374:67:64#HATPase_c:427:0.0000000447:512:90:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_030251705::NZ_JASSYD010000128.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3004-5253Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQQO70_05030RefSeq proteinWP_284915968.1
Context group ID
GCF_030251705::NZ_JASSYD010000128.1::G00005Context members
QQO70_RS05020QQO70_RS05025
Partner locus tags
QQO70_RS05020QQO70_RS05025
Partner old locus tags
QQO70_05025QQO70_05030
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_284915968.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQQO70_RS05025Primary locus identifier stored in the genes table.
Old locus tagQQO70_05030Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JASSYD010000128.1Sequence record reported by the local genomic context database.
Genomic interval3 689-5 253 nt1 565 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span3 004-5 253 ntGCF_030251705::NZ_JASSYD010000128.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_030251705::NZ_JASSYD010000128.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JASSYD010000128.1All displayed genes belong to this local TCS context.
Neighborhood span3 004-5 253 nt2 250 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 004 nt5 253 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QQO70_RS05020GCF_030251705#QQO70_RS05020
RROmpR
3 004-3 720 nt · Forward (+)
QQO70_RS05025GCF_030251705#QQO70_RS05025
HKClassicCurrent focus
3 689-5 253 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000155025#UAB_RS0212810Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1359698
Simplified PFAM architecture for HKOC_1359698
PFAM domain coverage: 191 / 529 aa (36.1%)
1 aa529 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[254-294] | HisKA[309-374] | HATPase_c[426-509]
- Domain count: 3
- Matched identifier: HKOC_1359698
- Positioned domains: HAMP 254-294 ; HisKA 309-374 ; HATPase_c 426-509
Cluster members and taxonomy
Representative gene: GCF_000155025#UAB_RS0212810
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_030251705
AssemblyASM3025170v1 · Contighaploid
Genome composition4 063 487 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 102 · HK 48 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key