1 HisKA#1
77-137 aa · 61 aa · 20.7% of protein
Raw token
HisKA:77:0.0000000000935:137:61:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QQO75_RS07500
Histidine kinase, Classic
Clostridioides difficile · GCF_030251645
ClassHKTypeClassicLength295 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_030251645#QQO75_RS07500Stable P2CS identifier used across views.
GenomeGCF_030251645Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length295 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage161 / 295 aa (54.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa295 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
193-292 aa · 100 aa · 33.9% of protein
Raw token
HATPase_c:193:1.31e-25:292:100:109- Raw architecture: HisKA:77:0.0000000000935:137:61:64#HATPase_c:193:1.31e-25:292:100:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_030251645::NZ_JASSXX010000141.1::G00004
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span25330-26219Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQQO75_07520RefSeq proteinWP_284927691.1
Context group ID
GCF_030251645::NZ_JASSXX010000141.1::G00004Context members
QQO75_RS07500
Partner locus tags
QQO75_RS07500
Partner old locus tags
QQO75_07520
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_284927691.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQQO75_RS07500Primary locus identifier stored in the genes table.
Old locus tagQQO75_07520Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JASSXX010000141.1Sequence record reported by the local genomic context database.
Genomic interval25 330-26 219 nt890 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span25 330-26 219 ntGCF_030251645::NZ_JASSXX010000141.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_030251645::NZ_JASSXX010000141.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JASSXX010000141.1All displayed genes belong to this local TCS context.
Neighborhood span25 330-26 219 nt890 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
25 330 nt26 219 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QQO75_RS07500GCF_030251645#QQO75_RS07500
HKClassicCurrent focus
25 330-26 219 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154625#QAB_RS0215090Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2113131
Simplified PFAM architecture for HKOC_2113131
PFAM domain coverage: 166 / 436 aa (38.1%)
1 aa436 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[217-278] | HATPase_c[330-433]
- Domain count: 2
- Matched identifier: HKOC_2113131
- Positioned domains: HisKA 217-278 ; HATPase_c 330-433
Cluster members and taxonomy
Representative gene: GCF_000154625#QAB_RS0215090
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_030251645
AssemblyASM3025164v1 · Contighaploid
Genome composition4 024 701 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 100 · HK 47 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key