1 HisKA#1
245-309 aa · 65 aa · 13.9% of protein
Raw token
HisKA:245:0.00000000000185:309:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QQO85_RS18505
Histidine kinase, Classic
Clostridioides difficile · GCF_030251535
ClassHKTypeClassicLength468 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_030251535#QQO85_RS18505Stable P2CS identifier used across views.
GenomeGCF_030251535Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length468 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage175 / 468 aa (37.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
357-466 aa · 110 aa · 23.5% of protein
Raw token
HATPase_c:357:9e-18:466:111:109- Raw architecture: HisKA:245:0.00000000000185:309:65:64#HATPase_c:357:9e-18:466:111:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_030251535::NZ_JASSXS010000585.1::G00060
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1004-3162Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQQO85_18505RefSeq proteinWP_011860909.1
Context group ID
GCF_030251535::NZ_JASSXS010000585.1::G00060Context members
QQO85_RS18505QQO85_RS18510
Partner locus tags
QQO85_RS18505QQO85_RS18510
Partner old locus tags
QQO85_18505QQO85_18510
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_011860909.1Primary protein accession used for annex mappings.
UniProt accessionQ189L3Primary UniProt accession resolved in the annex database.
UniProt IDQ189L3_CLOD6Display identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQQO85_RS18505Primary locus identifier stored in the genes table.
Old locus tagQQO85_18505Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JASSXS010000585.1Sequence record reported by the local genomic context database.
Genomic interval1 004-2 410 nt1 407 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 004-3 162 ntGCF_030251535::NZ_JASSXS010000585.1::G00060
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_030251535::NZ_JASSXS010000585.1::G00060Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JASSXS010000585.1All displayed genes belong to this local TCS context.
Neighborhood span1 004-3 162 nt2 159 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 004 nt3 162 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QQO85_RS18505GCF_030251535#QQO85_RS18505
HKClassicCurrent focus
1 004-2 410 nt · Reverse (-)
QQO85_RS18510GCF_030251535#QQO85_RS18510
RROmpR
2 455-3 162 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000009205#CD630_RS03920Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1737548
Simplified PFAM architecture for HKOC_1737548
PFAM domain coverage: 175 / 468 aa (37.4%)
1 aa468 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[245-310] | HATPase_c[358-466]
- Domain count: 2
- Matched identifier: HKOC_1737548
- Positioned domains: HisKA 245-310 ; HATPase_c 358-466
Cluster members and taxonomy
Representative gene: GCF_000009205#CD630_RS03920
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 50 over 61 total members. Page 1 / 2.
GCF_000009205#CD630_RS03920 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_030251535
AssemblyASM3025153v1 · Contighaploid
Genome composition4 170 741 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 108 · HK 51 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key