1 PAS_9#1
363-463 aa · 101 aa · 13.5% of protein
Raw token
PAS_9:363:0.0000491:463:101:102P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QQO85_RS14265
Histidine kinase, Classic
Clostridioides difficile · GCF_030251535
ClassHKTypeClassicLength746 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_030251535#QQO85_RS14265Stable P2CS identifier used across views.
GenomeGCF_030251535Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
PAS_9HisKAHATPase_c
Protein length746 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage284 / 746 aa (38.1%)Merged over positioned domains only.
Domain description1 PAS_9,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa746 aa
Domain-by-domain annotation3 items
2 HisKA#2
489-560 aa · 72 aa · 9.7% of protein
Raw token
HisKA:489:0.0000000000000071:560:72:643 HATPase_c#3
607-717 aa · 111 aa · 14.9% of protein
Raw token
HATPase_c:607:1.29e-31:717:111:109- Raw architecture: PAS_9:363:0.0000491:463:101:102#HisKA:489:0.0000000000000071:560:72:64#HATPase_c:607:1.29e-31:717:111:109
- Domain description: 1 PAS_9,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_030251535::NZ_JASSXS010000434.1::G00042
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1-2241Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQQO85_14265RefSeq proteinWP_284911713.1
Context group ID
GCF_030251535::NZ_JASSXS010000434.1::G00042Context members
QQO85_RS14265
Partner locus tags
QQO85_RS14265
Partner old locus tags
QQO85_14265
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_284911713.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQQO85_RS14265Primary locus identifier stored in the genes table.
Old locus tagQQO85_14265Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JASSXS010000434.1Sequence record reported by the local genomic context database.
Genomic interval1-2 241 nt2 241 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-2 241 ntGCF_030251535::NZ_JASSXS010000434.1::G00042
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_030251535::NZ_JASSXS010000434.1::G00042Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JASSXS010000434.1All displayed genes belong to this local TCS context.
Neighborhood span1-2 241 nt2 241 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt2 241 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QQO85_RS14265GCF_030251535#QQO85_RS14265
HKClassicCurrent focus
1-2 241 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000009205#CD630_RS13390Use this link to inspect the representative gene detail.
PFAM architecturePAS_8 + PAS_9 + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0387805
Simplified PFAM architecture for HKOC_0387805
PFAM domain coverage: 340 / 912 aa (37.3%)
1 aa912 aa
PAS_8PAS_9HisKAHATPase_c
- Simplified architecture: PAS_8 + PAS_9 + HisKA + HATPase_c
- Raw architecture: PAS_8[303-355] | PAS_9[529-632] | HisKA[655-726] | HATPase_c[773-883]
- Domain count: 4
- Matched identifier: HKOC_0387805
- Positioned domains: PAS_8 303-355 ; PAS_9 529-632 ; HisKA 655-726 ; HATPase_c 773-883
Cluster members and taxonomy
Representative gene: GCF_000009205#CD630_RS13390
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_030251535
AssemblyASM3025153v1 · Contighaploid
Genome composition4 170 741 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 108 · HK 51 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key