1 HisKA#1
53-116 aa · 64 aa · 23.9% of protein
Raw token
HisKA:53:0.0000000028:116:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QQO85_RS05795
Histidine kinase, Classic
Clostridioides difficile · GCF_030251535
ClassHKTypeClassicLength268 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_030251535#QQO85_RS05795Stable P2CS identifier used across views.
GenomeGCF_030251535Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length268 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage167 / 268 aa (62.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa268 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
166-268 aa · 103 aa · 38.4% of protein
Raw token
HATPase_c:166:5.53e-18:268:106:109- Raw architecture: HisKA:53:0.0000000028:116:64:64#HATPase_c:166:5.53e-18:268:106:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_030251535::NZ_JASSXS010000173.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span9927-11713Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQQO85_05795RefSeq proteinWP_231300505.1
Context group ID
GCF_030251535::NZ_JASSXS010000173.1::G00007Context members
QQO85_RS05795QQO85_RS05800
Partner locus tags
QQO85_RS05795QQO85_RS05800
Partner old locus tags
QQO85_05795QQO85_05800
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_231300505.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQQO85_RS05795Primary locus identifier stored in the genes table.
Old locus tagQQO85_05795Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JASSXS010000173.1Sequence record reported by the local genomic context database.
Genomic interval9 927-10 733 nt807 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span9 927-11 713 ntGCF_030251535::NZ_JASSXS010000173.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_030251535::NZ_JASSXS010000173.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JASSXS010000173.1All displayed genes belong to this local TCS context.
Neighborhood span9 927-11 713 nt1 787 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
9 927 nt11 713 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QQO85_RS05795GCF_030251535#QQO85_RS05795
HKClassicCurrent focus
9 927-10 733 nt · Reverse (-)
QQO85_RS05800GCF_030251535#QQO85_RS05800
RROmpR
11 045-11 713 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_900164815#B2A40_RS03885Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2783894
Simplified PFAM architecture for HKOC_2783894
PFAM domain coverage: 166 / 354 aa (46.9%)
1 aa354 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[139-202] | HATPase_c[252-353]
- Domain count: 2
- Matched identifier: HKOC_2783894
- Positioned domains: HisKA 139-202 ; HATPase_c 252-353
Cluster members and taxonomy
Representative gene: GCF_900164815#B2A40_RS03885
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_030251535
AssemblyASM3025153v1 · Contighaploid
Genome composition4 170 741 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 108 · HK 51 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key