1 HisKA#1
6-70 aa · 65 aa · 30.5% of protein
Raw token
HisKA:6:0.000000683:70:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QQO85_RS01330
Histidine kinase, Classic
Clostridioides difficile · GCF_030251535
ClassHKTypeClassicLength213 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_030251535#QQO85_RS01330Stable P2CS identifier used across views.
GenomeGCF_030251535Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length213 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage143 / 213 aa (67.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa213 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
116-193 aa · 78 aa · 36.6% of protein
Raw token
HATPase_c:116:0.00000222:193:90:109- Raw architecture: HisKA:6:0.000000683:70:65:64#HATPase_c:116:0.00000222:193:90:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_030251535::NZ_JASSXS010000043.1::G00043
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1-642Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQQO85_01330RefSeq proteinWP_284911392.1
Context group ID
GCF_030251535::NZ_JASSXS010000043.1::G00043Context members
QQO85_RS01330
Partner locus tags
QQO85_RS01330
Partner old locus tags
QQO85_01330
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_284911392.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQQO85_RS01330Primary locus identifier stored in the genes table.
Old locus tagQQO85_01330Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JASSXS010000043.1Sequence record reported by the local genomic context database.
Genomic interval1-642 nt642 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-642 ntGCF_030251535::NZ_JASSXS010000043.1::G00043
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_030251535::NZ_JASSXS010000043.1::G00043Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JASSXS010000043.1All displayed genes belong to this local TCS context.
Neighborhood span1-642 nt642 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt642 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QQO85_RS01330GCF_030251535#QQO85_RS01330
HKClassicCurrent focus
1-642 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_900243285#DBQ37_RS12670Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2081720
Simplified PFAM architecture for HKOC_2081720
PFAM domain coverage: 143 / 440 aa (32.5%)
1 aa440 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[234-297] | HATPase_c[343-421]
- Domain count: 2
- Matched identifier: HKOC_2081720
- Positioned domains: HisKA 234-297 ; HATPase_c 343-421
Cluster members and taxonomy
Representative gene: GCF_900243285#DBQ37_RS12670
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_030251535
AssemblyASM3025153v1 · Contighaploid
Genome composition4 170 741 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 108 · HK 51 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key