1 Response_reg#1
1-107 aa · 107 aa · 49.1% of protein
Raw token
Response_reg:1:1.02e-28:107:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QQO98_RS16240
Response regulator OmpR family
Clostridioides difficile · GCF_030251425
ClassRRTypeOmpRLength218 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_030251425#QQO98_RS16240Stable P2CS identifier used across views.
GenomeGCF_030251425Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length218 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 218 aa (84.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa218 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
138-214 aa · 77 aa · 35.3% of protein
Raw token
Trans_reg_C:138:1.8e-28:214:77:77- Raw architecture: Response_reg:1:1.02e-28:107:108:111#Trans_reg_C:138:1.8e-28:214:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_030251425::NZ_JASSXH010000389.1::G00043
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3-1569Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQQO98_16220RefSeq proteinWP_284924207.1
Context group ID
GCF_030251425::NZ_JASSXH010000389.1::G00043Context members
QQO98_RS16240QQO98_RS16245
Partner locus tags
QQO98_RS16240QQO98_RS16245
Partner old locus tags
QQO98_16220QQO98_16225
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_284924207.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQQO98_RS16240Primary locus identifier stored in the genes table.
Old locus tagQQO98_16220Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JASSXH010000389.1Sequence record reported by the local genomic context database.
Genomic interval3-659 nt657 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span3-1 569 ntGCF_030251425::NZ_JASSXH010000389.1::G00043
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_030251425::NZ_JASSXH010000389.1::G00043Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JASSXH010000389.1All displayed genes belong to this local TCS context.
Neighborhood span3-1 569 nt1 567 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 nt1 569 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QQO98_RS16240GCF_030251425#QQO98_RS16240
RROmpRCurrent focus
3-659 nt · Forward (+)
QQO98_RS16245GCF_030251425#QQO98_RS16245
HKClassic
661-1 569 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_030251425#QQO98_RS16240The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1831829
Simplified PFAM architecture for RROC_1831829
PFAM domain coverage: 182 / 218 aa (83.5%)
1 aa218 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[2-107] | Trans_reg_C[138-213]
- Domain count: 2
- Matched identifier: RROC_1831829
- Positioned domains: Response_reg 2-107 ; Trans_reg_C 138-213
Cluster members and taxonomy
Representative gene: GCF_030251425#QQO98_RS16240
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_030251425
AssemblyASM3025142v1 · Contighaploid
Genome composition3 965 131 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 98 · HK 47 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key