1 Response_reg#1
4-116 aa · 113 aa · 60.4% of protein
Raw token
Response_reg:4:3.92e-16:116:116:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QQO44_RS04165
Response regulator, unclassified
Clostridioides difficile · GCF_030251385
ClassRRTypeunclassifiedLength187 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_030251385#QQO44_RS04165Stable P2CS identifier used across views.
GenomeGCF_030251385Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length187 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage113 / 187 aa (60.4%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa187 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:3.92e-16:116:116:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_030251385::NZ_JASSXU010000105.1::G00001
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1-561Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQQO44_04175RefSeq proteinWP_284913379.1
Context group ID
GCF_030251385::NZ_JASSXU010000105.1::G00001Context members
QQO44_RS04165
Partner locus tags
QQO44_RS04165
Partner old locus tags
QQO44_04175
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_284913379.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQQO44_RS04165Primary locus identifier stored in the genes table.
Old locus tagQQO44_04175Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JASSXU010000105.1Sequence record reported by the local genomic context database.
Genomic interval1-561 nt561 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1-561 ntGCF_030251385::NZ_JASSXU010000105.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_030251385::NZ_JASSXU010000105.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JASSXU010000105.1All displayed genes belong to this local TCS context.
Neighborhood span1-561 nt561 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt561 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QQO44_RS04165GCF_030251385#QQO44_RS04165
RRunclassifiedCurrent focus
1-561 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000235905#HMPREF9945_RS05325Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0988884
Simplified PFAM architecture for RROC_0988884
PFAM domain coverage: 201 / 236 aa (85.2%)
1 aa236 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-116] | LytTR[140-227]
- Domain count: 2
- Matched identifier: RROC_0988884
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; LytTR 140-227 ; LytTR 140-227
Cluster members and taxonomy
Representative gene: GCF_000235905#HMPREF9945_RS05325
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_030251385
AssemblyASM3025138v1 · Contighaploid
Genome composition4 326 404 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 97 · HK 45 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key