1 Response_reg#1
4-71 aa · 68 aa · 95.8% of protein
Raw token
Response_reg:4:0.0000000000000429:71:68:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QQO58_RS12965
Response regulator, CheY family
Clostridioides difficile · GCF_030251305
ClassRRTypeCheYLength71 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_030251305#QQO58_RS12965Stable P2CS identifier used across views.
GenomeGCF_030251305Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length71 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage68 / 71 aa (95.8%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa71 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:0.0000000000000429:71:68:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_030251305::NZ_JASSXG010000347.1::G00035
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1493-1705Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQQO58_12960RefSeq proteinWP_131086608.1
Context group ID
GCF_030251305::NZ_JASSXG010000347.1::G00035Context members
QQO58_RS12965
Partner locus tags
QQO58_RS12965
Partner old locus tags
QQO58_12960
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_131086608.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQQO58_RS12965Primary locus identifier stored in the genes table.
Old locus tagQQO58_12960Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JASSXG010000347.1Sequence record reported by the local genomic context database.
Genomic interval1 493-1 705 nt213 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 493-1 705 ntGCF_030251305::NZ_JASSXG010000347.1::G00035
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_030251305::NZ_JASSXG010000347.1::G00035Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JASSXG010000347.1All displayed genes belong to this local TCS context.
Neighborhood span1 493-1 705 nt213 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 493 nt1 705 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QQO58_RS12965GCF_030251305#QQO58_RS12965
RRCheYCurrent focus
1 493-1 705 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003215#QAC_RS0209900Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1301497
Simplified PFAM architecture for RROC_1301497
PFAM domain coverage: 184 / 228 aa (80.7%)
1 aa228 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[146-220]
- Domain count: 2
- Matched identifier: RROC_1301497
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 146-220 ; Trans_reg_C 146-220
Cluster members and taxonomy
Representative gene: GCF_000003215#QAC_RS0209900
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_030251305
AssemblyASM3025130v1 · Contighaploid
Genome composition3 956 422 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 99 · HK 47 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key