1 Response_reg#1
6-114 aa · 109 aa · 48.9% of protein
Raw token
Response_reg:6:8.55e-26:114:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QQO58_RS11475
Response regulator OmpR family
Clostridioides difficile · GCF_030251305
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_030251305#QQO58_RS11475Stable P2CS identifier used across views.
GenomeGCF_030251305Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 223 aa (83.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-223 aa · 76 aa · 34.1% of protein
Raw token
Trans_reg_C:148:2.1e-23:223:77:77- Raw architecture: Response_reg:6:8.55e-26:114:110:111#Trans_reg_C:148:2.1e-23:223:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_030251305::NZ_JASSXG010000310.1::G00030
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span4465-5136Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQQO58_11465RefSeq proteinWP_074441422.1
Context group ID
GCF_030251305::NZ_JASSXG010000310.1::G00030Context members
QQO58_RS11475
Partner locus tags
QQO58_RS11475
Partner old locus tags
QQO58_11465
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_074441422.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQQO58_RS11475Primary locus identifier stored in the genes table.
Old locus tagQQO58_11465Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JASSXG010000310.1Sequence record reported by the local genomic context database.
Genomic interval4 465-5 136 nt672 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span4 465-5 136 ntGCF_030251305::NZ_JASSXG010000310.1::G00030
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_030251305::NZ_JASSXG010000310.1::G00030Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JASSXG010000310.1All displayed genes belong to this local TCS context.
Neighborhood span4 465-5 136 nt672 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 465 nt5 136 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QQO58_RS11475GCF_030251305#QQO58_RS11475
RROmpRCurrent focus
4 465-5 136 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_030251305#QQO58_RS11475The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1617856
Simplified PFAM architecture for RROC_1617856
PFAM domain coverage: 185 / 223 aa (83.0%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-114] | Trans_reg_C[148-223]
- Domain count: 2
- Matched identifier: RROC_1617856
- Positioned domains: Response_reg 6-114 ; Trans_reg_C 148-223
Cluster members and taxonomy
Representative gene: GCF_030251305#QQO58_RS11475
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_030251305
AssemblyASM3025130v1 · Contighaploid
Genome composition3 956 422 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 99 · HK 47 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key