1 Response_reg#1
2-116 aa · 115 aa · 49.6% of protein
Raw token
Response_reg:2:7.66e-22:116:117:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QQO58_RS00605
Response regulator LytTR family
Clostridioides difficile · GCF_030251305
ClassRRTypeLytTRLength232 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_030251305#QQO58_RS00605Stable P2CS identifier used across views.
GenomeGCF_030251305Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length232 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage200 / 232 aa (86.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa232 aa
Domain-by-domain annotation2 items
2 LytTR#2
137-221 aa · 85 aa · 36.6% of protein
Raw token
LytTR:137:8.62e-19:221:92:98- Raw architecture: Response_reg:2:7.66e-22:116:117:111#LytTR:137:8.62e-19:221:92:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_030251305::NZ_JASSXG010000017.1::G00014
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span48-746Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQQO58_00605RefSeq proteinWP_284965897.1
Context group ID
GCF_030251305::NZ_JASSXG010000017.1::G00014Context members
QQO58_RS00605
Partner locus tags
QQO58_RS00605
Partner old locus tags
QQO58_00605
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_284965897.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQQO58_RS00605Primary locus identifier stored in the genes table.
Old locus tagQQO58_00605Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JASSXG010000017.1Sequence record reported by the local genomic context database.
Genomic interval48-746 nt699 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span48-746 ntGCF_030251305::NZ_JASSXG010000017.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_030251305::NZ_JASSXG010000017.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JASSXG010000017.1All displayed genes belong to this local TCS context.
Neighborhood span48-746 nt699 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
48 nt746 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QQO58_RS00605GCF_030251305#QQO58_RS00605
RRLytTRCurrent focus
48-746 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_900096315#DK451_RS09350Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0861078
Simplified PFAM architecture for RROC_0861078
PFAM domain coverage: 200 / 242 aa (82.6%)
1 aa242 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[10-125] | LytTR[148-231]
- Domain count: 2
- Matched identifier: RROC_0861078
- Positioned domains: Response_reg 10-125 ; LytTR 148-231
Cluster members and taxonomy
Representative gene: GCF_900096315#DK451_RS09350
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_030251305
AssemblyASM3025130v1 · Contighaploid
Genome composition3 956 422 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 99 · HK 47 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key