1 Response_reg#1
11-120 aa · 110 aa · 47.4% of protein
Raw token
Response_reg:11:9.27e-19:120:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QQO60_RS15075
Response regulator OmpR family
Clostridioides difficile · GCF_030251225
ClassRRTypeOmpRLength232 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_030251225#QQO60_RS15075Stable P2CS identifier used across views.
GenomeGCF_030251225Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length232 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 232 aa (80.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa232 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-229 aa · 77 aa · 33.2% of protein
Raw token
Trans_reg_C:153:4.06e-21:229:78:77- Raw architecture: Response_reg:11:9.27e-19:120:111:111#Trans_reg_C:153:4.06e-21:229:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_030251225::NZ_JASSXC010000406.1::G00044
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1-699Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQQO60_15080RefSeq proteinWP_284968133.1
Context group ID
GCF_030251225::NZ_JASSXC010000406.1::G00044Context members
QQO60_RS15075
Partner locus tags
QQO60_RS15075
Partner old locus tags
QQO60_15080
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_284968133.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQQO60_RS15075Primary locus identifier stored in the genes table.
Old locus tagQQO60_15080Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JASSXC010000406.1Sequence record reported by the local genomic context database.
Genomic interval1-699 nt699 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-699 ntGCF_030251225::NZ_JASSXC010000406.1::G00044
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_030251225::NZ_JASSXC010000406.1::G00044Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JASSXC010000406.1All displayed genes belong to this local TCS context.
Neighborhood span1-699 nt699 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt699 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QQO60_RS15075GCF_030251225#QQO60_RS15075
RROmpRCurrent focus
1-699 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_030251225#QQO60_RS15075The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1143242
Simplified PFAM architecture for RROC_1143242
PFAM domain coverage: 185 / 232 aa (79.7%)
1 aa232 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[11-119] | Trans_reg_C[154-229]
- Domain count: 2
- Matched identifier: RROC_1143242
- Positioned domains: Response_reg 11-119 ; Trans_reg_C 154-229
Cluster members and taxonomy
Representative gene: GCF_030251225#QQO60_RS15075
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_030251225
AssemblyASM3025122v1 · Contighaploid
Genome composition4 293 592 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 105 · HK 49 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key