1 Response_reg#1
4-112 aa · 109 aa · 47.4% of protein
Raw token
Response_reg:4:5.74e-33:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QQO88_RS06670
Response regulator OmpR family
Clostridioides difficile · GCF_030251125
ClassRRTypeOmpRLength230 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_030251125#QQO88_RS06670Stable P2CS identifier used across views.
GenomeGCF_030251125Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 230 aa (80.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-227 aa · 77 aa · 33.5% of protein
Raw token
Trans_reg_C:151:3.58e-28:227:77:77- Raw architecture: Response_reg:4:5.74e-33:112:111:111#Trans_reg_C:151:3.58e-28:227:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_030251125::NZ_JASSXD010000167.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span6269-8404Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQQO88_06675RefSeq proteinWP_032544217.1
Context group ID
GCF_030251125::NZ_JASSXD010000167.1::G00014Context members
QQO88_RS06665QQO88_RS06670
Partner locus tags
QQO88_RS06665QQO88_RS06670
Partner old locus tags
QQO88_06670QQO88_06675
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_032544217.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQQO88_RS06670Primary locus identifier stored in the genes table.
Old locus tagQQO88_06675Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JASSXD010000167.1Sequence record reported by the local genomic context database.
Genomic interval7 712-8 404 nt693 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span6 269-8 404 ntGCF_030251125::NZ_JASSXD010000167.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_030251125::NZ_JASSXD010000167.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JASSXD010000167.1All displayed genes belong to this local TCS context.
Neighborhood span6 269-8 404 nt2 136 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
6 269 nt8 404 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QQO88_RS06665GCF_030251125#QQO88_RS06665
HKClassic
6 269-7 693 nt · Reverse (-)
QQO88_RS06670GCF_030251125#QQO88_RS06670
RROmpRCurrent focus
7 712-8 404 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000450445#QKY_RS02235Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1202427
Simplified PFAM architecture for RROC_1202427
PFAM domain coverage: 185 / 230 aa (80.4%)
1 aa230 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[151-226]
- Domain count: 2
- Matched identifier: RROC_1202427
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 151-226 ; Trans_reg_C 151-226
Cluster members and taxonomy
Representative gene: GCF_000450445#QKY_RS02235
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_030251125
AssemblyASM3025112v1 · Contighaploid
Genome composition3 985 503 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 97 · HK 46 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key