1 Response_reg#1
4-113 aa · 110 aa · 85.3% of protein
Raw token
Response_reg:4:3.14e-28:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QQO53_RS02960
Response regulator, CheY family
Clostridioides difficile · GCF_030251025
ClassRRTypeCheYLength129 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_030251025#QQO53_RS02960Stable P2CS identifier used across views.
GenomeGCF_030251025Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length129 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage110 / 129 aa (85.3%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa129 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:3.14e-28:113:111:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_030251025::NZ_JASSXE010000091.1::G00056
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1686-2074Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQQO53_02960RefSeq proteinWP_284971556.1
Context group ID
GCF_030251025::NZ_JASSXE010000091.1::G00056Context members
QQO53_RS02960
Partner locus tags
QQO53_RS02960
Partner old locus tags
QQO53_02960
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_284971556.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQQO53_RS02960Primary locus identifier stored in the genes table.
Old locus tagQQO53_02960Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JASSXE010000091.1Sequence record reported by the local genomic context database.
Genomic interval1 686-2 074 nt389 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 686-2 074 ntGCF_030251025::NZ_JASSXE010000091.1::G00056
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_030251025::NZ_JASSXE010000091.1::G00056Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JASSXE010000091.1All displayed genes belong to this local TCS context.
Neighborhood span1 686-2 074 nt389 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 686 nt2 074 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QQO53_RS02960GCF_030251025#QQO53_RS02960
RRCheYCurrent focus
1 686-2 074 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003215#QAC_RS0212790Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1016365
Simplified PFAM architecture for RROC_1016365
PFAM domain coverage: 185 / 235 aa (78.7%)
1 aa235 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[151-226]
- Domain count: 2
- Matched identifier: RROC_1016365
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 151-226 ; Trans_reg_C 151-226
Cluster members and taxonomy
Representative gene: GCF_000003215#QAC_RS0212790
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_030251025
AssemblyASM3025102v1 · Contighaploid
Genome composition4 293 315 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 99 · HK 46 · RR 52CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key