1 Response_reg#1
3-114 aa · 112 aa · 85.5% of protein
Raw token
Response_reg:3:6.54e-26:114:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QQO51_RS07105
Response regulator, CheY family
Clostridioides difficile · GCF_030250965
ClassRRTypeCheYLength131 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_030250965#QQO51_RS07105Stable P2CS identifier used across views.
GenomeGCF_030250965Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length131 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage112 / 131 aa (85.5%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa131 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:3:6.54e-26:114:112:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_030250965::NZ_JASSXF010000218.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span8179-10567Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQQO51_07110RefSeq proteinWP_284966534.1
Context group ID
GCF_030250965::NZ_JASSXF010000218.1::G00013Context members
QQO51_RS07100QQO51_RS07105
Partner locus tags
QQO51_RS07100QQO51_RS07105
Partner old locus tags
QQO51_07105QQO51_07110
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_284966534.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQQO51_RS07105Primary locus identifier stored in the genes table.
Old locus tagQQO51_07110Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JASSXF010000218.1Sequence record reported by the local genomic context database.
Genomic interval10 173-10 567 nt395 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span8 179-10 567 ntGCF_030250965::NZ_JASSXF010000218.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_030250965::NZ_JASSXF010000218.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JASSXF010000218.1All displayed genes belong to this local TCS context.
Neighborhood span8 179-10 567 nt2 389 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
8 179 nt10 567 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QQO51_RS07100GCF_030250965#QQO51_RS07100
HKClassic
8 179-10 173 nt · Forward (+)
QQO51_RS07105GCF_030250965#QQO51_RS07105
RRCheYCurrent focus
10 173-10 567 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002302125#BGU89_RS14310Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Sigma54_activat + AAA_lid_14 + HTH_84 domains in the representative PFAM annotation.
PFAM architecture for RROC_0313110
Simplified PFAM architecture for RROC_0313110
PFAM domain coverage: 386 / 445 aa (86.7%)
1 aa445 aa
Response_regSigma54_activatAAA_lid_14HTH_8
- Simplified architecture: Response_reg + Sigma54_activat + AAA_lid_14 + HTH_8
- Raw architecture: Response_reg[3-113] | Sigma54_activat[137-300] | AAA_lid_14[306-375] | HTH_8[397-437]
- Domain count: 4
- Matched identifier: RROC_0313110
- Positioned domains: Response_reg 3-113 ; Response_reg 3-113 ; Sigma54_activat 137-300 ; Sigma54_activat 137-300 ; AAA_lid_14 306-375 ; AAA_lid_14 306-375 ; HTH_8 397-437 ; HTH_8 397-437
Cluster members and taxonomy
Representative gene: GCF_002302125#BGU89_RS14310
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_030250965
AssemblyASM3025096v1 · Contighaploid
Genome composition4 070 280 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 98 · HK 46 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key