1 HisKA#1
1-65 aa · 65 aa · 28.4% of protein
Raw token
HisKA:1:0.000000000000423:65:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QQO47_RS13980
Histidine kinase, Classic
Clostridioides difficile · GCF_030250955
ClassHKTypeClassicLength229 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_030250955#QQO47_RS13980Stable P2CS identifier used across views.
GenomeGCF_030250955Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage175 / 229 aa (76.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
110-219 aa · 110 aa · 48.0% of protein
Raw token
HATPase_c:110:2.57e-32:219:110:109- Raw architecture: HisKA:1:0.000000000000423:65:65:64#HATPase_c:110:2.57e-32:219:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_030250955::NZ_JASSWM010000322.1::G00030
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span32607-33991Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQQO47_13980RefSeq proteinWP_284918265.1
Context group ID
GCF_030250955::NZ_JASSWM010000322.1::G00030Context members
QQO47_RS13975QQO47_RS13980
Partner locus tags
QQO47_RS13975QQO47_RS13980
Partner old locus tags
QQO47_13975QQO47_13980
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_284918265.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQQO47_RS13980Primary locus identifier stored in the genes table.
Old locus tagQQO47_13980Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JASSWM010000322.1Sequence record reported by the local genomic context database.
Genomic interval33 302-33 991 nt690 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span32 607-33 991 ntGCF_030250955::NZ_JASSWM010000322.1::G00030
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_030250955::NZ_JASSWM010000322.1::G00030Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JASSWM010000322.1All displayed genes belong to this local TCS context.
Neighborhood span32 607-33 991 nt1 385 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
32 607 nt33 991 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QQO47_RS13975GCF_030250955#QQO47_RS13975
RROmpR
32 607-33 311 nt · Reverse (-)
QQO47_RS13980GCF_030250955#QQO47_RS13980
HKClassicCurrent focus
33 302-33 991 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_030250955#QQO47_RS13980The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2926426
Simplified PFAM architecture for HKOC_2926426
PFAM domain coverage: 175 / 229 aa (76.4%)
1 aa229 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[1-65] | HATPase_c[110-219]
- Domain count: 2
- Matched identifier: HKOC_2926426
- Positioned domains: HisKA 1-65 ; HATPase_c 110-219
Cluster members and taxonomy
Representative gene: GCF_030250955#QQO47_RS13980
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_030250955
AssemblyASM3025095v1 · Contighaploid
Genome composition4 012 315 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 97 · HK 46 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key