1 Response_reg#1
4-113 aa · 110 aa · 48.2% of protein
Raw token
Response_reg:4:9.43e-29:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QQO50_RS10595
Response regulator OmpR family
Clostridioides difficile · GCF_030250935
ClassRRTypeOmpRLength228 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_030250935#QQO50_RS10595Stable P2CS identifier used across views.
GenomeGCF_030250935Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 228 aa (81.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
146-221 aa · 76 aa · 33.3% of protein
Raw token
Trans_reg_C:146:7.34e-24:221:78:77- Raw architecture: Response_reg:4:9.43e-29:113:111:111#Trans_reg_C:146:7.34e-24:221:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_030250935::NZ_JASSWK010000274.1::G00020
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span7487-9194Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQQO50_10590RefSeq proteinWP_011861401.1
Context group ID
GCF_030250935::NZ_JASSWK010000274.1::G00020Context members
QQO50_RS10590QQO50_RS10595
Partner locus tags
QQO50_RS10590QQO50_RS10595
Partner old locus tags
QQO50_10585QQO50_10590
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_011861401.1Primary protein accession used for annex mappings.
UniProt accessionQ187R9Primary UniProt accession resolved in the annex database.
UniProt IDQ187R9_CLOD6Display identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQQO50_RS10595Primary locus identifier stored in the genes table.
Old locus tagQQO50_10590Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JASSWK010000274.1Sequence record reported by the local genomic context database.
Genomic interval8 508-9 194 nt687 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span7 487-9 194 ntGCF_030250935::NZ_JASSWK010000274.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_030250935::NZ_JASSWK010000274.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JASSWK010000274.1All displayed genes belong to this local TCS context.
Neighborhood span7 487-9 194 nt1 708 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
7 487 nt9 194 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QQO50_RS10590GCF_030250935#QQO50_RS10590
HKClassic
7 487-8 518 nt · Reverse (-)
QQO50_RS10595GCF_030250935#QQO50_RS10595
RROmpRCurrent focus
8 508-9 194 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000009205#CD630_RS10610Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1301544
Simplified PFAM architecture for RROC_1301544
PFAM domain coverage: 184 / 228 aa (80.7%)
1 aa228 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[146-220]
- Domain count: 2
- Matched identifier: RROC_1301544
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 146-220 ; Trans_reg_C 146-220
Cluster members and taxonomy
Representative gene: GCF_000009205#CD630_RS10610
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_030250935
AssemblyASM3025093v1 · Contighaploid
Genome composition4 104 059 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 95 · HK 45 · RR 49CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key