1 Response_reg#1
3-114 aa · 112 aa · 25.9% of protein
Raw token
Response_reg:3:1.04e-25:114:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QQO50_RS07065
Response regulator NtrC family
Clostridioides difficile · GCF_030250935
ClassRRTypeNtrCLength433 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_030250935#QQO50_RS07065Stable P2CS identifier used across views.
GenomeGCF_030250935Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regAAA_5HTH_8
Protein length433 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage267 / 433 aa (61.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 AAA_5,1 HTH_8Summary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa433 aa
Domain-by-domain annotation3 items
2 AAA_5#2
157-275 aa · 119 aa · 27.5% of protein
Raw token
AAA_5:157:0.000000003:275:128:1353 HTH_8#3
398-433 aa · 36 aa · 8.3% of protein
Raw token
HTH_8:398:0.00000000733:433:36:40- Raw architecture: Response_reg:3:1.04e-25:114:112:111#AAA_5:157:0.000000003:275:128:135#HTH_8:398:0.00000000733:433:36:40
- Domain description: 1 Response_reg,1 AAA_5,1 HTH_8
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_030250935::NZ_JASSWK010000202.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1-3295Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQQO50_07065RefSeq proteinWP_284971259.1
Context group ID
GCF_030250935::NZ_JASSWK010000202.1::G00011Context members
QQO50_RS07065QQO50_RS07070
Partner locus tags
QQO50_RS07065QQO50_RS07070
Partner old locus tags
QQO50_07065QQO50_07070
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_284971259.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQQO50_RS07065Primary locus identifier stored in the genes table.
Old locus tagQQO50_07065Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JASSWK010000202.1Sequence record reported by the local genomic context database.
Genomic interval1-1 301 nt1 301 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1-3 295 ntGCF_030250935::NZ_JASSWK010000202.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_030250935::NZ_JASSWK010000202.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JASSWK010000202.1All displayed genes belong to this local TCS context.
Neighborhood span1-3 295 nt3 295 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt3 295 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QQO50_RS07065GCF_030250935#QQO50_RS07065
RRNtrCCurrent focus
1-1 301 nt · Reverse (-)
QQO50_RS07070GCF_030250935#QQO50_RS07070
HKClassic
1 301-3 295 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003215#QAC_RS0208990Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Sigma54_activat + AAA_lid_14 + HTH_84 domains in the representative PFAM annotation.
PFAM architecture for RROC_0333905
Simplified PFAM architecture for RROC_0333905
PFAM domain coverage: 386 / 440 aa (87.7%)
1 aa440 aa
Response_regSigma54_activatAAA_lid_14HTH_8
- Simplified architecture: Response_reg + Sigma54_activat + AAA_lid_14 + HTH_8
- Raw architecture: Response_reg[3-113] | Sigma54_activat[137-300] | AAA_lid_14[306-375] | HTH_8[397-437]
- Domain count: 4
- Matched identifier: RROC_0333905
- Positioned domains: Response_reg 3-113 ; Response_reg 3-113 ; Sigma54_activat 137-300 ; Sigma54_activat 137-300 ; AAA_lid_14 306-375 ; AAA_lid_14 306-375 ; HTH_8 397-437 ; HTH_8 397-437
Cluster members and taxonomy
Representative gene: GCF_000003215#QAC_RS0208990
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_030250935
AssemblyASM3025093v1 · Contighaploid
Genome composition4 104 059 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 95 · HK 45 · RR 49CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key