1 HisKA#1
196-260 aa · 65 aa · 15.3% of protein
Raw token
HisKA:196:0.0000000000159:260:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QQO84_RS04465
Histidine kinase, Classic
Clostridioides difficile · GCF_030250765
ClassHKTypeClassicLength424 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_030250765#QQO84_RS04465Stable P2CS identifier used across views.
GenomeGCF_030250765Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length424 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 424 aa (43.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa424 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
307-424 aa · 118 aa · 27.8% of protein
Raw token
HATPase_c:307:8.51e-19:424:119:109- Raw architecture: HisKA:196:0.0000000000159:260:65:64#HATPase_c:307:8.51e-19:424:119:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_030250765::NZ_JASSWU010000104.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2755-4680Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQQO84_04470RefSeq proteinWP_284969873.1
Context group ID
GCF_030250765::NZ_JASSWU010000104.1::G00001Context members
QQO84_RS04460QQO84_RS04465
Partner locus tags
QQO84_RS04460QQO84_RS04465
Partner old locus tags
QQO84_04465QQO84_04470
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_284969873.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQQO84_RS04465Primary locus identifier stored in the genes table.
Old locus tagQQO84_04470Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JASSWU010000104.1Sequence record reported by the local genomic context database.
Genomic interval3 407-4 680 nt1 274 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 755-4 680 ntGCF_030250765::NZ_JASSWU010000104.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_030250765::NZ_JASSWU010000104.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JASSWU010000104.1All displayed genes belong to this local TCS context.
Neighborhood span2 755-4 680 nt1 926 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 755 nt4 680 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QQO84_RS04460GCF_030250765#QQO84_RS04460
RROmpR
2 755-3 423 nt · Forward (+)
QQO84_RS04465GCF_030250765#QQO84_RS04465
HKClassicCurrent focus
3 407-4 680 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000155065#QAE_RS0210295Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2216037
Simplified PFAM architecture for HKOC_2216037
PFAM domain coverage: 179 / 425 aa (42.1%)
1 aa425 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[197-260] | HATPase_c[308-422]
- Domain count: 2
- Matched identifier: HKOC_2216037
- Positioned domains: HisKA 197-260 ; HATPase_c 308-422
Cluster members and taxonomy
Representative gene: GCF_000155065#QAE_RS0210295
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_030250765
AssemblyASM3025076v1 · Contighaploid
Genome composition4 068 994 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 96 · HK 47 · RR 49CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key