1 Response_reg#1
5-117 aa · 113 aa · 56.5% of protein
Raw token
Response_reg:5:1.95e-22:117:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QQO84_RS00575
Response regulator, unclassified
Clostridioides difficile · GCF_030250765
ClassRRTypeunclassifiedLength200 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_030250765#QQO84_RS00575Stable P2CS identifier used across views.
GenomeGCF_030250765Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length200 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage155 / 200 aa (77.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa200 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
137-178 aa · 42 aa · 21.0% of protein
Raw token
HTH_AraC:137:0.0001:178:42:42- Raw architecture: Response_reg:5:1.95e-22:117:113:111#HTH_AraC:137:0.0001:178:42:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_030250765::NZ_JASSWU010000020.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3976-6194Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQQO84_00575RefSeq proteinWP_284969843.1
Context group ID
GCF_030250765::NZ_JASSWU010000020.1::G00014Context members
QQO84_RS00570QQO84_RS00575
Partner locus tags
QQO84_RS00570QQO84_RS00575
Partner old locus tags
QQO84_00570QQO84_00575
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_284969843.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQQO84_RS00575Primary locus identifier stored in the genes table.
Old locus tagQQO84_00575Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JASSWU010000020.1Sequence record reported by the local genomic context database.
Genomic interval5 595-6 194 nt600 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span3 976-6 194 ntGCF_030250765::NZ_JASSWU010000020.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_030250765::NZ_JASSWU010000020.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JASSWU010000020.1All displayed genes belong to this local TCS context.
Neighborhood span3 976-6 194 nt2 219 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 976 nt6 194 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QQO84_RS00570GCF_030250765#QQO84_RS00570
HKClassic
3 976-5 481 nt · Forward (+)
QQO84_RS00575GCF_030250765#QQO84_RS00575
RRunclassifiedCurrent focus
5 595-6 194 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000155065#QAE_RS0214030Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_1119711
Simplified PFAM architecture for RROC_1119711
PFAM domain coverage: 189 / 232 aa (81.5%)
1 aa232 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[5-116] | HTH_18[151-227]
- Domain count: 2
- Matched identifier: RROC_1119711
- Positioned domains: Response_reg 5-116 ; Response_reg 5-116 ; HTH_18 151-227 ; HTH_18 151-227
Cluster members and taxonomy
Representative gene: GCF_000155065#QAE_RS0214030
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_030250765
AssemblyASM3025076v1 · Contighaploid
Genome composition4 068 994 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 96 · HK 47 · RR 49CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key