1 HisKA#1
234-299 aa · 66 aa · 14.5% of protein
Raw token
HisKA:234:0.00000000000000225:299:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QQO68_RS02655
Histidine kinase, Classic
Clostridioides difficile · GCF_030250675
ClassHKTypeClassicLength454 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_030250675#QQO68_RS02655Stable P2CS identifier used across views.
GenomeGCF_030250675Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length454 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage177 / 454 aa (39.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa454 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
344-454 aa · 111 aa · 24.4% of protein
Raw token
HATPase_c:344:7.53e-22:454:111:109- Raw architecture: HisKA:234:0.00000000000000225:299:66:64#HATPase_c:344:7.53e-22:454:111:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_030250675::NZ_JASSWY010000051.1::G00047
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span8300-10314Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQQO68_02655RefSeq proteinWP_022617693.1
Context group ID
GCF_030250675::NZ_JASSWY010000051.1::G00047Context members
QQO68_RS02650QQO68_RS02655
Partner locus tags
QQO68_RS02650QQO68_RS02655
Partner old locus tags
QQO68_02650QQO68_02655
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_022617693.1Primary protein accession used for annex mappings.
UniProt accessionA0AB74QD42Primary UniProt accession resolved in the annex database.
UniProt IDA0AB74QD42_CLODIDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQQO68_RS02655Primary locus identifier stored in the genes table.
Old locus tagQQO68_02655Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JASSWY010000051.1Sequence record reported by the local genomic context database.
Genomic interval8 950-10 314 nt1 365 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span8 300-10 314 ntGCF_030250675::NZ_JASSWY010000051.1::G00047
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_030250675::NZ_JASSWY010000051.1::G00047Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JASSWY010000051.1All displayed genes belong to this local TCS context.
Neighborhood span8 300-10 314 nt2 015 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
8 300 nt10 314 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QQO68_RS02650GCF_030250675#QQO68_RS02650
RROmpR
8 300-8 959 nt · Forward (+)
QQO68_RS02655GCF_030250675#QQO68_RS02655
HKClassicCurrent focus
8 950-10 314 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000530415#BN179_RS19495Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1912810
Simplified PFAM architecture for HKOC_1912810
PFAM domain coverage: 177 / 454 aa (39.0%)
1 aa454 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[234-299] | HATPase_c[344-454]
- Domain count: 2
- Matched identifier: HKOC_1912810
- Positioned domains: HisKA 234-299 ; HATPase_c 344-454
Cluster members and taxonomy
Representative gene: GCF_000530415#BN179_RS19495
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_030250675
AssemblyASM3025067v1 · Contighaploid
Genome composition4 090 652 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 97 · HK 45 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key