1 Response_reg#1
4-116 aa · 113 aa · 53.8% of protein
Raw token
Response_reg:4:6.81e-25:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QRO86_RS10585
Response regulator NarL family
Enterococcus faecalis · GCF_030237805
ClassRRTypeNarLLength210 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_030237805#QRO86_RS10585Stable P2CS identifier used across views.
GenomeGCF_030237805Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length210 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 210 aa (81.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa210 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
146-203 aa · 58 aa · 27.6% of protein
Raw token
HTH_LUXR:146:2.21e-25:203:58:58- Raw architecture: Response_reg:4:6.81e-25:116:113:111#HTH_LUXR:146:2.21e-25:203:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_030237805::NZ_JASGSM010000018.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span15408-17118Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_030237805::NZ_JASGSM010000018.1::G00015Context members
QRO86_RS10585QRO86_RS10590
Partner locus tags
QRO86_RS10585QRO86_RS10590
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_010821829.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQRO86_RS10585Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JASGSM010000018.1Sequence record reported by the local genomic context database.
Genomic interval15 408-16 040 nt633 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span15 408-17 118 ntGCF_030237805::NZ_JASGSM010000018.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_030237805::NZ_JASGSM010000018.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JASGSM010000018.1All displayed genes belong to this local TCS context.
Neighborhood span15 408-17 118 nt1 711 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
15 408 nt17 118 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QRO86_RS10585GCF_030237805#QRO86_RS10585
RRNarLCurrent focus
15 408-16 040 nt · Reverse (-)
QRO86_RS10590GCF_030237805#QRO86_RS10590
HKClassic
16 015-17 118 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000393095#WO1_RS16605Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2019916
Simplified PFAM architecture for RROC_2019916
PFAM domain coverage: 168 / 210 aa (80.0%)
1 aa210 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[4-116] | GerE[149-203]
- Domain count: 2
- Matched identifier: RROC_2019916
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; GerE 149-203 ; GerE 149-203
Cluster members and taxonomy
Representative gene: GCF_000393095#WO1_RS16605
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 351 · GCF_030237805
AssemblyASM3023780v1 · Contighaploid
Genome composition3 163 337 bp · 37,0% GCEnterococcus faecalis
Signal transduction countsGenes 33 · HK 15 · RR 18CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key