1 Response_reg#1
6-119 aa · 114 aa · 46.9% of protein
Raw token
Response_reg:6:5.42e-16:119:116:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QRO86_RS06070
Response regulator LytTR family
Enterococcus faecalis · GCF_030237805
ClassRRTypeLytTRLength243 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_030237805#QRO86_RS06070Stable P2CS identifier used across views.
GenomeGCF_030237805Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length243 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage209 / 243 aa (86.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa243 aa
Domain-by-domain annotation2 items
2 LytTR#2
138-232 aa · 95 aa · 39.1% of protein
Raw token
LytTR:138:9.99e-17:232:99:98- Raw architecture: Response_reg:6:5.42e-16:119:116:111#LytTR:138:9.99e-17:232:99:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_030237805::NZ_JASGSM010000006.1::G00010
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span83423-84154Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_030237805::NZ_JASGSM010000006.1::G00010Context members
QRO86_RS06070
Partner locus tags
QRO86_RS06070
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_071869084.1Primary protein accession used for annex mappings.
UniProt accessionA0A510WHU6Primary UniProt accession resolved in the annex database.
UniProt IDA0A510WHU6_ENTTHDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQRO86_RS06070Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JASGSM010000006.1Sequence record reported by the local genomic context database.
Genomic interval83 423-84 154 nt732 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span83 423-84 154 ntGCF_030237805::NZ_JASGSM010000006.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_030237805::NZ_JASGSM010000006.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JASGSM010000006.1All displayed genes belong to this local TCS context.
Neighborhood span83 423-84 154 nt732 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
83 423 nt84 154 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QRO86_RS06070GCF_030237805#QRO86_RS06070
RRLytTRCurrent focus
83 423-84 154 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001886265#RV17_RS09455Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0827828
Simplified PFAM architecture for RROC_0827828
PFAM domain coverage: 203 / 243 aa (83.5%)
1 aa243 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[6-118] | LytTR[139-228]
- Domain count: 2
- Matched identifier: RROC_0827828
- Positioned domains: Response_reg 6-118 ; Response_reg 6-118 ; LytTR 139-228 ; LytTR 139-228
Cluster members and taxonomy
Representative gene: GCF_001886265#RV17_RS09455
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 351 · GCF_030237805
AssemblyASM3023780v1 · Contighaploid
Genome composition3 163 337 bp · 37,0% GCEnterococcus faecalis
Signal transduction countsGenes 33 · HK 15 · RR 18CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key