1 Response_reg#1
9-127 aa · 119 aa · 46.5% of protein
Raw token
Response_reg:9:2.35e-29:127:119:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QP510_RS04935
Response regulator NarL family
Bifidobacterium breve · GCF_030219005
ClassRRTypeNarLLength256 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_030219005#QP510_RS04935Stable P2CS identifier used across views.
GenomeGCF_030219005Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length256 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage177 / 256 aa (69.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa256 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
193-250 aa · 58 aa · 22.7% of protein
Raw token
HTH_LUXR:193:3.38e-24:250:58:58- Raw architecture: Response_reg:9:2.35e-29:127:119:111#HTH_LUXR:193:3.38e-24:250:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_030219005::NZ_JASOQW010000006.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span19477-22737Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQP510_04920RefSeq proteinWP_103619834.1
Context group ID
GCF_030219005::NZ_JASOQW010000006.1::G00006Context members
QP510_RS04935QP510_RS04940
Partner locus tags
QP510_RS04935QP510_RS04940
Partner old locus tags
QP510_04920QP510_04925
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_103619834.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQP510_RS04935Primary locus identifier stored in the genes table.
Old locus tagQP510_04920Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JASOQW010000006.1Sequence record reported by the local genomic context database.
Genomic interval19 477-20 247 nt771 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span19 477-22 737 ntGCF_030219005::NZ_JASOQW010000006.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_030219005::NZ_JASOQW010000006.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JASOQW010000006.1All displayed genes belong to this local TCS context.
Neighborhood span19 477-22 737 nt3 261 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
19 477 nt22 737 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QP510_RS04935GCF_030219005#QP510_RS04935
RRNarLCurrent focus
19 477-20 247 nt · Reverse (-)
QP510_RS04940GCF_030219005#QP510_RS04940
HKClassic
20 269-22 737 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002838445#DRBB27_RS04860Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0674446
Simplified PFAM architecture for RROC_0674446
PFAM domain coverage: 174 / 256 aa (68.0%)
1 aa256 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[9-126] | GerE[195-250]
- Domain count: 2
- Matched identifier: RROC_0674446
- Positioned domains: Response_reg 9-126 ; Response_reg 9-126 ; GerE 195-250 ; GerE 195-250
Cluster members and taxonomy
Representative gene: GCF_002838445#DRBB27_RS04860
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 685 · GCF_030219005
AssemblyASM3021900v1 · Contighaploid
Genome composition2 385 889 bp · 58,5% GCBifidobacterium breve
Signal transduction countsGenes 21 · HK 9 · RR 11CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key