1 Response_reg#1
11-111 aa · 101 aa · 41.6% of protein
Raw token
Response_reg:11:1.43e-20:111:103:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MYB93_RS04020
Response regulator LytTR family
Mediterraneibacter gnavus · GCF_030167985
ClassRRTypeLytTRLength243 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_030167985#MYB93_RS04020Stable P2CS identifier used across views.
GenomeGCF_030167985Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length243 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage189 / 243 aa (77.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa243 aa
Domain-by-domain annotation2 items
2 LytTR#2
146-233 aa · 88 aa · 36.2% of protein
Raw token
LytTR:146:0.000000000000255:233:93:98- Raw architecture: Response_reg:11:1.43e-20:111:103:111#LytTR:146:0.000000000000255:233:93:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_030167985::NZ_CP096671.1::G00012
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span827492-828223Genomic interval covered by the local TCS group.
Identifiers
Old locus tagMYB93_04005RefSeq proteinWP_284588124.1
Context group ID
GCF_030167985::NZ_CP096671.1::G00012Context members
MYB93_RS04020
Partner locus tags
MYB93_RS04020
Partner old locus tags
MYB93_04005
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_284588124.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMYB93_RS04020Primary locus identifier stored in the genes table.
Old locus tagMYB93_04005Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP096671.1Sequence record reported by the local genomic context database.
Genomic interval827 492-828 223 nt732 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span827 492-828 223 ntGCF_030167985::NZ_CP096671.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_030167985::NZ_CP096671.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP096671.1All displayed genes belong to this local TCS context.
Neighborhood span827 492-828 223 nt732 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
827 492 nt828 223 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
MYB93_RS04020GCF_030167985#MYB93_RS04020
RRLytTRCurrent focus
827 492-828 223 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_030167985#MYB93_RS04020The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0836394
Simplified PFAM architecture for RROC_0836394
PFAM domain coverage: 192 / 243 aa (79.0%)
1 aa243 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[10-114] | LytTR[147-233]
- Domain count: 2
- Matched identifier: RROC_0836394
- Positioned domains: Response_reg 10-114 ; LytTR 147-233
Cluster members and taxonomy
Representative gene: GCF_030167985#MYB93_RS04020
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_030167985
AssemblyASM3016798v1 · Complete Genomehaploid
Genome composition3 195 566 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 78 · HK 37 · RR 40CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key