1 HisKA_3#1
36-101 aa · 66 aa · 28.9% of protein
Raw token
HisKA_3:36:0.000000000000454:101:68:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MYB93_RS02630
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_030167985
ClassHKTypeClassicLength228 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_030167985#MYB93_RS02630Stable P2CS identifier used across views.
GenomeGCF_030167985Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage153 / 228 aa (67.1%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
140-226 aa · 87 aa · 38.2% of protein
Raw token
HATPase_c:140:0.000000000285:226:101:109- Raw architecture: HisKA_3:36:0.000000000000454:101:68:68#HATPase_c:140:0.000000000285:226:101:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_030167985::NZ_CP096671.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span527408-528719Genomic interval covered by the local TCS group.
Identifiers
Old locus tagMYB93_02620RefSeq proteinWP_009245038.1
Context group ID
GCF_030167985::NZ_CP096671.1::G00008Context members
MYB93_RS02625MYB93_RS02630
Partner locus tags
MYB93_RS02625MYB93_RS02630
Partner old locus tags
MYB93_02615MYB93_02620
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009245038.1Primary protein accession used for annex mappings.
UniProt accessionA0AAJ1AY70Primary UniProt accession resolved in the annex database.
UniProt IDA0AAJ1AY70_MEDGNDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMYB93_RS02630Primary locus identifier stored in the genes table.
Old locus tagMYB93_02620Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP096671.1Sequence record reported by the local genomic context database.
Genomic interval528 033-528 719 nt687 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span527 408-528 719 ntGCF_030167985::NZ_CP096671.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_030167985::NZ_CP096671.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP096671.1All displayed genes belong to this local TCS context.
Neighborhood span527 408-528 719 nt1 312 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
527 408 nt528 719 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
MYB93_RS02625GCF_030167985#MYB93_RS02625
RRNarL
527 408-528 028 nt · Reverse (-)
MYB93_RS02630GCF_030167985#MYB93_RS02630
HKClassicCurrent focus
528 033-528 719 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_042847305#ACGHAT_RS04190Use this link to inspect the representative gene detail.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2889585
Simplified PFAM architecture for HKOC_2889585
PFAM domain coverage: 65 / 298 aa (21.8%)
1 aa298 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[106-170]
- Domain count: 1
- Matched identifier: HKOC_2889585
- Positioned domains: HisKA_3 106-170
Cluster members and taxonomy
Representative gene: GCF_042847305#ACGHAT_RS04190
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_030167985
AssemblyASM3016798v1 · Complete Genomehaploid
Genome composition3 195 566 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 78 · HK 37 · RR 40CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key