1 Response_reg#1
6-116 aa · 111 aa · 49.3% of protein
Raw token
Response_reg:6:1.59e-32:116:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MYB93_RS02575
Response regulator OmpR family
Mediterraneibacter gnavus · GCF_030167985
ClassRRTypeOmpRLength225 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_030167985#MYB93_RS02575Stable P2CS identifier used across views.
GenomeGCF_030167985Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length225 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 225 aa (82.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa225 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
149-222 aa · 74 aa · 32.9% of protein
Raw token
Trans_reg_C:149:2.03e-32:222:77:77- Raw architecture: Response_reg:6:1.59e-32:116:112:111#Trans_reg_C:149:2.03e-32:222:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_030167985::NZ_CP096671.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span517710-519871Genomic interval covered by the local TCS group.
Identifiers
Old locus tagMYB93_02565RefSeq proteinWP_023924201.1
Context group ID
GCF_030167985::NZ_CP096671.1::G00007Context members
MYB93_RS02575MYB93_RS02580
Partner locus tags
MYB93_RS02575MYB93_RS02580
Partner old locus tags
MYB93_02565MYB93_02570
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_023924201.1Primary protein accession used for annex mappings.
UniProt accessionA0A829NJ73Primary UniProt accession resolved in the annex database.
UniProt IDA0A829NJ73_MEDG5Display identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMYB93_RS02575Primary locus identifier stored in the genes table.
Old locus tagMYB93_02565Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP096671.1Sequence record reported by the local genomic context database.
Genomic interval517 710-518 387 nt678 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span517 710-519 871 ntGCF_030167985::NZ_CP096671.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_030167985::NZ_CP096671.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP096671.1All displayed genes belong to this local TCS context.
Neighborhood span517 710-519 871 nt2 162 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
517 710 nt519 871 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
MYB93_RS02575GCF_030167985#MYB93_RS02575
RROmpRCurrent focus
517 710-518 387 nt · Forward (+)
MYB93_RS02580GCF_030167985#MYB93_RS02580
HKClassic
518 387-519 871 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000507805#HMPREF1201_RS11175Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1466963
Simplified PFAM architecture for RROC_1466963
PFAM domain coverage: 184 / 225 aa (81.8%)
1 aa225 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[149-222]
- Domain count: 2
- Matched identifier: RROC_1466963
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; Trans_reg_C 149-222 ; Trans_reg_C 149-222
Cluster members and taxonomy
Representative gene: GCF_000507805#HMPREF1201_RS11175
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_030167985
AssemblyASM3016798v1 · Complete Genomehaploid
Genome composition3 195 566 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 78 · HK 37 · RR 40CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key