1 Response_reg#1
27-109 aa · 83 aa · 61.0% of protein
Raw token
Response_reg:27:0.00000000000013:109:83:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MCM6_RS11715
Response regulator, CheY family
Bifidobacterium longum subsp. infantis · GCF_029983055
ClassRRTypeCheYLength136 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_029983055#MCM6_RS11715Stable P2CS identifier used across views.
GenomeGCF_029983055Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length136 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage83 / 136 aa (61.0%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa136 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:27:0.00000000000013:109:83:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_029983055::NZ_JAQLRW010000001.1::G00002
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span220460-220870Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_029983055::NZ_JAQLRW010000001.1::G00002Context members
MCM6_RS11715
Partner locus tags
MCM6_RS11715
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_080714792.1Primary protein accession used for annex mappings.
UniProt accessionA0A7D4YEB9Primary UniProt accession resolved in the annex database.
UniProt IDA0A7D4YEB9_BIFLIDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMCM6_RS11715Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAQLRW010000001.1Sequence record reported by the local genomic context database.
Genomic interval220 460-220 870 nt411 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span220 460-220 870 ntGCF_029983055::NZ_JAQLRW010000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_029983055::NZ_JAQLRW010000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQLRW010000001.1All displayed genes belong to this local TCS context.
Neighborhood span220 460-220 870 nt411 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
220 460 nt220 870 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
MCM6_RS11715GCF_029983055#MCM6_RS11715
RRCheYCurrent focus
220 460-220 870 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_029983055#MCM6_RS11715The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2286733
Simplified PFAM architecture for RROC_2286733
PFAM domain coverage: 82 / 136 aa (60.3%)
1 aa136 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[27-108]
- Domain count: 1
- Matched identifier: RROC_2286733
- Positioned domains: Response_reg 27-108
Cluster members and taxonomy
Representative gene: GCF_029983055#MCM6_RS11715
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 682 · GCF_029983055
AssemblyASM2998305v1 · Contighaploid
Genome composition2 570 985 bp · 59,5% GCBifidobacterium longum subsp. infantis
Signal transduction countsGenes 39 · HK 10 · RR 23CheA 0 · PP 6
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key