1 HisKA_3#1
207-271 aa · 65 aa · 14.8% of protein
Raw token
HisKA_3:207:0.0000000000000178:271:65:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
OB929_RS07425
Histidine kinase, Classic
Bifidobacterium catenulatum subsp. kashiwanohense · GCF_029911545
ClassHKTypeClassicLength440 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_029911545#OB929_RS07425Stable P2CS identifier used across views.
GenomeGCF_029911545Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length440 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage175 / 440 aa (39.8%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa440 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
317-426 aa · 110 aa · 25.0% of protein
Raw token
HATPase_c:317:0.00000000217:426:111:109- Raw architecture: HisKA_3:207:0.0000000000000178:271:65:68#HATPase_c:317:0.00000000217:426:111:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_029911545::NZ_JAOPLX010000016.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span61034-63015Genomic interval covered by the local TCS group.
Identifiers
Old locus tagOB929_07420RefSeq proteinWP_154304029.1
Context group ID
GCF_029911545::NZ_JAOPLX010000016.1::G00003Context members
OB929_RS07420OB929_RS07425
Partner locus tags
OB929_RS07420OB929_RS07425
Partner old locus tags
OB929_07415OB929_07420
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_154304029.1Primary protein accession used for annex mappings.
UniProt accessionA0AA43P8U0Primary UniProt accession resolved in the annex database.
UniProt IDA0AA43P8U0_9BIFIDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagOB929_RS07425Primary locus identifier stored in the genes table.
Old locus tagOB929_07420Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAOPLX010000016.1Sequence record reported by the local genomic context database.
Genomic interval61 693-63 015 nt1 323 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span61 034-63 015 ntGCF_029911545::NZ_JAOPLX010000016.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_029911545::NZ_JAOPLX010000016.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAOPLX010000016.1All displayed genes belong to this local TCS context.
Neighborhood span61 034-63 015 nt1 982 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
61 034 nt63 015 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
OB929_RS07420GCF_029911545#OB929_RS07420
RRNarL
61 034-61 693 nt · Reverse (-)
OB929_RS07425GCF_029911545#OB929_RS07425
HKClassicCurrent focus
61 693-63 015 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009684555#BKKJ1_RS07635Use this link to inspect the representative gene detail.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2075141
Simplified PFAM architecture for HKOC_2075141
PFAM domain coverage: 66 / 440 aa (15.0%)
1 aa440 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[207-272]
- Domain count: 1
- Matched identifier: HKOC_2075141
- Positioned domains: HisKA_3 207-272
Cluster members and taxonomy
Representative gene: GCF_009684555#BKKJ1_RS07635
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 630 129 · GCF_029911545
AssemblyASM2991154v1 · Contighaploid
Genome composition2 349 394 bp · 56,0% GCBifidobacterium catenulatum subsp. kashiwanohense
Signal transduction countsGenes 20 · HK 10 · RR 10CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key