1 Response_reg#1
7-100 aa · 94 aa · 45.9% of protein
Raw token
Response_reg:7:5.61e-28:100:94:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
OB923_RS03225
Response regulator OmpR family
Bifidobacterium catenulatum subsp. kashiwanohense · GCF_029911505
ClassRRTypeOmpRLength205 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_029911505#OB923_RS03225Stable P2CS identifier used across views.
GenomeGCF_029911505Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length205 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage167 / 205 aa (81.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa205 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
132-204 aa · 73 aa · 35.6% of protein
Raw token
Trans_reg_C:132:0.00000000000000827:204:77:77- Raw architecture: Response_reg:7:5.61e-28:100:94:111#Trans_reg_C:132:0.00000000000000827:204:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_029911505::NZ_JAOPMA010000003.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span282170-284037Genomic interval covered by the local TCS group.
Identifiers
Old locus tagOB923_03220RefSeq proteinWP_228429049.1
Context group ID
GCF_029911505::NZ_JAOPMA010000003.1::G00005Context members
OB923_RS03220OB923_RS03225
Partner locus tags
OB923_RS03220OB923_RS03225
Partner old locus tags
OB923_03215OB923_03220
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_228429049.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagOB923_RS03225Primary locus identifier stored in the genes table.
Old locus tagOB923_03220Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAOPMA010000003.1Sequence record reported by the local genomic context database.
Genomic interval283 420-284 037 nt618 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span282 170-284 037 ntGCF_029911505::NZ_JAOPMA010000003.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_029911505::NZ_JAOPMA010000003.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAOPMA010000003.1All displayed genes belong to this local TCS context.
Neighborhood span282 170-284 037 nt1 868 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
282 170 nt284 037 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
OB923_RS03220GCF_029911505#OB923_RS03220
HKClassic
282 170-283 423 nt · Reverse (-)
OB923_RS03225GCF_029911505#OB923_RS03225
RROmpRCurrent focus
283 420-284 037 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009684555#BKKJ1_RS02900Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2093008
Simplified PFAM architecture for RROC_2093008
PFAM domain coverage: 165 / 205 aa (80.5%)
1 aa205 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[7-99] | Trans_reg_C[133-204]
- Domain count: 2
- Matched identifier: RROC_2093008
- Positioned domains: Response_reg 7-99 ; Response_reg 7-99 ; Trans_reg_C 133-204 ; Trans_reg_C 133-204
Cluster members and taxonomy
Representative gene: GCF_009684555#BKKJ1_RS02900
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 630 129 · GCF_029911505
AssemblyASM2991150v1 · Contighaploid
Genome composition2 256 707 bp · 56,0% GCBifidobacterium catenulatum subsp. kashiwanohense
Signal transduction countsGenes 20 · HK 10 · RR 10CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key