1 HisKA#1
185-247 aa · 63 aa · 15.1% of protein
Raw token
HisKA:185:0.00000000314:247:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
OB945_RS03235
Histidine kinase, Classic
Bifidobacterium catenulatum subsp. kashiwanohense · GCF_029911435
ClassHKTypeClassicLength417 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_029911435#OB945_RS03235Stable P2CS identifier used across views.
GenomeGCF_029911435Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length417 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 417 aa (45.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa417 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
291-415 aa · 125 aa · 30.0% of protein
Raw token
HATPase_c:291:3.13e-20:415:125:109- Raw architecture: HisKA:185:0.00000000314:247:65:64#HATPase_c:291:3.13e-20:415:125:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_029911435::NZ_JAOPME010000004.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span281978-283845Genomic interval covered by the local TCS group.
Identifiers
Old locus tagOB945_03230RefSeq proteinWP_281088045.1
Context group ID
GCF_029911435::NZ_JAOPME010000004.1::G00008Context members
OB945_RS03235OB945_RS03240
Partner locus tags
OB945_RS03235OB945_RS03240
Partner old locus tags
OB945_03230OB945_03235
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_281088045.1Primary protein accession used for annex mappings.
UniProt accessionA0AAJ1UND3Primary UniProt accession resolved in the annex database.
UniProt IDA0AAJ1UND3_9BIFIDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagOB945_RS03235Primary locus identifier stored in the genes table.
Old locus tagOB945_03230Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAOPME010000004.1Sequence record reported by the local genomic context database.
Genomic interval281 978-283 231 nt1 254 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span281 978-283 845 ntGCF_029911435::NZ_JAOPME010000004.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_029911435::NZ_JAOPME010000004.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAOPME010000004.1All displayed genes belong to this local TCS context.
Neighborhood span281 978-283 845 nt1 868 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
281 978 nt283 845 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
OB945_RS03235GCF_029911435#OB945_RS03235
HKClassicCurrent focus
281 978-283 231 nt · Reverse (-)
OB945_RS03240GCF_029911435#OB945_RS03240
RROmpR
283 228-283 845 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_029911415#OB936_RS03245Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2297899
Simplified PFAM architecture for HKOC_2297899
PFAM domain coverage: 189 / 417 aa (45.3%)
1 aa417 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[184-247] | HATPase_c[291-415]
- Domain count: 2
- Matched identifier: HKOC_2297899
- Positioned domains: HisKA 184-247 ; HATPase_c 291-415
Cluster members and taxonomy
Representative gene: GCF_029911415#OB936_RS03245
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 630 129 · GCF_029911435
AssemblyASM2991143v1 · Contighaploid
Genome composition2 432 378 bp · 56,5% GCBifidobacterium catenulatum subsp. kashiwanohense
Signal transduction countsGenes 24 · HK 11 · RR 12CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key