1 Response_reg#1
13-126 aa · 114 aa · 52.3% of protein
Raw token
Response_reg:13:0.00000000000000102:126:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
OB937_RS00365
Response regulator NarL family
Bifidobacterium catenulatum subsp. kashiwanohense · GCF_029911425
ClassRRTypeNarLLength218 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_029911425#OB937_RS00365Stable P2CS identifier used across views.
GenomeGCF_029911425Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length218 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 218 aa (78.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HTH_LUXR#2
155-211 aa · 57 aa · 26.1% of protein
Raw token
HTH_LUXR:155:8.04e-19:211:57:58- Raw architecture: Response_reg:13:0.00000000000000102:126:115:111#HTH_LUXR:155:8.04e-19:211:57:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_029911425::NZ_JAOPMC010000001.1::G00001
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span86030-86686Genomic interval covered by the local TCS group.
Identifiers
Old locus tagOB937_00365RefSeq proteinWP_154303346.1
Context group ID
GCF_029911425::NZ_JAOPMC010000001.1::G00001Context members
OB937_RS00365
Partner locus tags
OB937_RS00365
Partner old locus tags
OB937_00365
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_154303346.1Primary protein accession used for annex mappings.
UniProt accessionA0AA43T595Primary UniProt accession resolved in the annex database.
UniProt IDA0AA43T595_9BIFIDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagOB937_RS00365Primary locus identifier stored in the genes table.
Old locus tagOB937_00365Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAOPMC010000001.1Sequence record reported by the local genomic context database.
Genomic interval86 030-86 686 nt657 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span86 030-86 686 ntGCF_029911425::NZ_JAOPMC010000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_029911425::NZ_JAOPMC010000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAOPMC010000001.1All displayed genes belong to this local TCS context.
Neighborhood span86 030-86 686 nt657 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
86 030 nt86 686 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
OB937_RS00365GCF_029911425#OB937_RS00365
RRNarLCurrent focus
86 030-86 686 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009684555#BKKJ1_RS00225Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1822958
Simplified PFAM architecture for RROC_1822958
PFAM domain coverage: 167 / 218 aa (76.6%)
1 aa218 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[13-125] | GerE[157-210]
- Domain count: 2
- Matched identifier: RROC_1822958
- Positioned domains: Response_reg 13-125 ; Response_reg 13-125 ; GerE 157-210 ; GerE 157-210
Cluster members and taxonomy
Representative gene: GCF_009684555#BKKJ1_RS00225
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 630 129 · GCF_029911425
AssemblyASM2991142v1 · Contighaploid
Genome composition2 276 115 bp · 56,0% GCBifidobacterium catenulatum subsp. kashiwanohense
Signal transduction countsGenes 21 · HK 10 · RR 11CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key