1 HisKA_3#1
171-230 aa · 60 aa · 15.3% of protein
Raw token
HisKA_3:171:0.000000000000144:230:62:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
OB936_RS05385
Histidine kinase, Classic
Bifidobacterium catenulatum subsp. kashiwanohense · GCF_029911415
ClassHKTypeClassicLength392 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_029911415#OB936_RS05385Stable P2CS identifier used across views.
GenomeGCF_029911415Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length392 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage144 / 392 aa (36.7%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa392 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
274-357 aa · 84 aa · 21.4% of protein
Raw token
HATPase_c:274:0.000000142:357:96:109- Raw architecture: HisKA_3:171:0.000000000000144:230:62:68#HATPase_c:274:0.000000142:357:96:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_029911415::NZ_JAOPMD010000009.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span219049-220916Genomic interval covered by the local TCS group.
Identifiers
Old locus tagOB936_05385RefSeq proteinWP_281088125.1
Context group ID
GCF_029911415::NZ_JAOPMD010000009.1::G00005Context members
OB936_RS05380OB936_RS05385
Partner locus tags
OB936_RS05380OB936_RS05385
Partner old locus tags
OB936_05380OB936_05385
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_281088125.1Primary protein accession used for annex mappings.
UniProt accessionA0AAJ1PAF4Primary UniProt accession resolved in the annex database.
UniProt IDA0AAJ1PAF4_9BIFIDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagOB936_RS05385Primary locus identifier stored in the genes table.
Old locus tagOB936_05385Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAOPMD010000009.1Sequence record reported by the local genomic context database.
Genomic interval219 738-220 916 nt1 179 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span219 049-220 916 ntGCF_029911415::NZ_JAOPMD010000009.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_029911415::NZ_JAOPMD010000009.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAOPMD010000009.1All displayed genes belong to this local TCS context.
Neighborhood span219 049-220 916 nt1 868 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
219 049 nt220 916 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
OB936_RS05380GCF_029911415#OB936_RS05380
RRNarL
219 049-219 744 nt · Reverse (-)
OB936_RS05385GCF_029911415#OB936_RS05385
HKClassicCurrent focus
219 738-220 916 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_029911415#OB936_RS05385The current gene is the representative for this cluster.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2515225
Simplified PFAM architecture for HKOC_2515225
PFAM domain coverage: 60 / 392 aa (15.3%)
1 aa392 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[171-230]
- Domain count: 1
- Matched identifier: HKOC_2515225
- Positioned domains: HisKA_3 171-230
Cluster members and taxonomy
Representative gene: GCF_029911415#OB936_RS05385
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 630 129 · GCF_029911415
AssemblyASM2991141v1 · Contighaploid
Genome composition2 515 135 bp · 56,5% GCBifidobacterium catenulatum subsp. kashiwanohense
Signal transduction countsGenes 22 · HK 11 · RR 11CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key