1 Response_reg#1
15-127 aa · 113 aa · 48.9% of protein
Raw token
Response_reg:15:2.06e-28:127:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
OB936_RS05380
Response regulator NarL family
Bifidobacterium catenulatum subsp. kashiwanohense · GCF_029911415
ClassRRTypeNarLLength231 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_029911415#OB936_RS05380Stable P2CS identifier used across views.
GenomeGCF_029911415Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length231 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 231 aa (74.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa231 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
167-224 aa · 58 aa · 25.1% of protein
Raw token
HTH_LUXR:167:4.79e-18:224:58:58- Raw architecture: Response_reg:15:2.06e-28:127:113:111#HTH_LUXR:167:4.79e-18:224:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_029911415::NZ_JAOPMD010000009.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span219049-220916Genomic interval covered by the local TCS group.
Identifiers
Old locus tagOB936_05380RefSeq proteinWP_281088124.1
Context group ID
GCF_029911415::NZ_JAOPMD010000009.1::G00005Context members
OB936_RS05380OB936_RS05385
Partner locus tags
OB936_RS05380OB936_RS05385
Partner old locus tags
OB936_05380OB936_05385
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_281088124.1Primary protein accession used for annex mappings.
UniProt accessionA0AAJ1PAF8Primary UniProt accession resolved in the annex database.
UniProt IDA0AAJ1PAF8_9BIFIDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagOB936_RS05380Primary locus identifier stored in the genes table.
Old locus tagOB936_05380Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAOPMD010000009.1Sequence record reported by the local genomic context database.
Genomic interval219 049-219 744 nt696 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span219 049-220 916 ntGCF_029911415::NZ_JAOPMD010000009.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_029911415::NZ_JAOPMD010000009.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAOPMD010000009.1All displayed genes belong to this local TCS context.
Neighborhood span219 049-220 916 nt1 868 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
219 049 nt220 916 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
OB936_RS05380GCF_029911415#OB936_RS05380
RRNarLCurrent focus
219 049-219 744 nt · Reverse (-)
OB936_RS05385GCF_029911415#OB936_RS05385
HKClassic
219 738-220 916 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_029911415#OB936_RS05380The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1182734
Simplified PFAM architecture for RROC_1182734
PFAM domain coverage: 168 / 231 aa (72.7%)
1 aa231 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[15-127] | GerE[170-224]
- Domain count: 2
- Matched identifier: RROC_1182734
- Positioned domains: Response_reg 15-127 ; GerE 170-224
Cluster members and taxonomy
Representative gene: GCF_029911415#OB936_RS05380
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 630 129 · GCF_029911415
AssemblyASM2991141v1 · Contighaploid
Genome composition2 515 135 bp · 56,5% GCBifidobacterium catenulatum subsp. kashiwanohense
Signal transduction countsGenes 22 · HK 11 · RR 11CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key