1 HisKA_3#1
243-305 aa · 63 aa · 7.2% of protein
Raw token
HisKA_3:243:1.69e-18:305:63:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
OB936_RS03740
Histidine kinase, Classic
Bifidobacterium catenulatum subsp. kashiwanohense · GCF_029911415
ClassHKTypeClassicLength870 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_029911415#OB936_RS03740Stable P2CS identifier used across views.
GenomeGCF_029911415Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length870 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage150 / 870 aa (17.2%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa870 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
354-440 aa · 87 aa · 10.0% of protein
Raw token
HATPase_c:354:0.000000000000628:440:104:109- Raw architecture: HisKA_3:243:1.69e-18:305:63:68#HATPase_c:354:0.000000000000628:440:104:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_029911415::NZ_JAOPMD010000006.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span398679-402113Genomic interval covered by the local TCS group.
Identifiers
Old locus tagOB936_03740RefSeq proteinWP_281108630.1
Context group ID
GCF_029911415::NZ_JAOPMD010000006.1::G00004Context members
OB936_RS03735OB936_RS03740
Partner locus tags
OB936_RS03735OB936_RS03740
Partner old locus tags
OB936_03735OB936_03740
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_281108630.1Primary protein accession used for annex mappings.
UniProt accessionA0AAJ1P9B1Primary UniProt accession resolved in the annex database.
UniProt IDA0AAJ1P9B1_9BIFIDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagOB936_RS03740Primary locus identifier stored in the genes table.
Old locus tagOB936_03740Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAOPMD010000006.1Sequence record reported by the local genomic context database.
Genomic interval399 501-402 113 nt2 613 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span398 679-402 113 ntGCF_029911415::NZ_JAOPMD010000006.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_029911415::NZ_JAOPMD010000006.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAOPMD010000006.1All displayed genes belong to this local TCS context.
Neighborhood span398 679-402 113 nt3 435 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
398 679 nt402 113 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
OB936_RS03735GCF_029911415#OB936_RS03735
RRNarL
398 679-399 425 nt · Reverse (-)
OB936_RS03740GCF_029911415#OB936_RS03740
HKClassicCurrent focus
399 501-402 113 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_029911415#OB936_RS03740The current gene is the representative for this cluster.
PFAM architectureDUF7134 + HisKA_3 + HATPase_c + DUF71344 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0458930
Simplified PFAM architecture for HKOC_0458930
PFAM domain coverage: 425 / 870 aa (48.9%)
1 aa870 aa
DUF7134HisKA_3HATPase_cDUF7134
- Simplified architecture: DUF7134 + HisKA_3 + HATPase_c + DUF7134
- Raw architecture: DUF7134[10-145] | HisKA_3[243-305] | HATPase_c[354-441] | DUF7134[555-692]
- Domain count: 4
- Matched identifier: HKOC_0458930
- Positioned domains: DUF7134 10-145 ; HisKA_3 243-305 ; HATPase_c 354-441 ; DUF7134 555-692
Cluster members and taxonomy
Representative gene: GCF_029911415#OB936_RS03740
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 630 129 · GCF_029911415
AssemblyASM2991141v1 · Contighaploid
Genome composition2 515 135 bp · 56,5% GCBifidobacterium catenulatum subsp. kashiwanohense
Signal transduction countsGenes 22 · HK 11 · RR 11CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key